Literature DB >> 9519299

Simplified proteins: minimalist solutions to the 'protein folding problem'.

K W Plaxco1, D S Riddle, V Grantcharova, D Baker.   

Abstract

Recent research has suggested that stable, native proteins may be encoded by simple sequences of fewer than the full set of 20 proteogenic amino acids. Studies of the ability of simple amino acid sequences to encode stable, topologically complex, native conformations and to fold to these conformations in a biologically relevant time frame have provided insights into the sequence determinants of protein structure and folding kinetics. They may also have important implications for protein design and for theories of the origins of protein synthesis itself.

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Year:  1998        PMID: 9519299     DOI: 10.1016/s0959-440x(98)80013-4

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  17 in total

1.  Reverse engineering the (beta/alpha )8 barrel fold.

Authors:  J A Silverman; R Balakrishnan; P B Harbury
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

Review 2.  Breaking open a protein barrel.

Authors:  N Kallenbach
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

3.  The role of aromatic residues in the hydrophobic core of the villin headpiece subdomain.

Authors:  Benjamin S Frank; Didem Vardar; Deirdre A Buckley; C James McKnight
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

4.  Native protein sequences are close to optimal for their structures.

Authors:  B Kuhlman; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

5.  Folding free energy function selects native-like protein sequences in the core but not on the surface.

Authors:  Alfonso Jaramillo; Lorenz Wernisch; Stéphanie Héry; Shoshana J Wodak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-04       Impact factor: 11.205

6.  Coarse-grained sequences for protein folding and design.

Authors:  Scott Brown; Nicolas J Fawzi; Teresa Head-Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-08       Impact factor: 11.205

7.  Folding Trp-cage to NMR resolution native structure using a coarse-grained protein model.

Authors:  Feng Ding; Sergey V Buldyrev; Nikolay V Dokholyan
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

8.  Consolidating critical binding determinants by noncyclic rearrangement of protein secondary structure.

Authors:  Ramon K Tabtiang; Brent O Cezairliyan; Robert A Grant; Jesse C Cochrane; Robert T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-02       Impact factor: 11.205

Review 9.  Mechanism of the eukaryotic chaperonin: protein folding in the chamber of secrets.

Authors:  Christoph Spiess; Anne S Meyer; Stefanie Reissmann; Judith Frydman
Journal:  Trends Cell Biol       Date:  2004-11       Impact factor: 20.808

Review 10.  Structural determinants of protein folding.

Authors:  Tse Siang Kang; R Manjunatha Kini
Journal:  Cell Mol Life Sci       Date:  2009-04-15       Impact factor: 9.261

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