Literature DB >> 9513042

DNA loop anchorage region colocalizes with the replication origin located downstream to the human gene encoding lamin B2.

M A Lagarkova1, E Svetlova, M Giacca, A Falaschi, S V Razin.   

Abstract

The recently developed procedure of topoisomerase II-mediated DNA loop excision has been used to analyze the topological organization of a human genome fragment containing the gene encoding lamin B2 and the ppv1 gene. A 3.5 kb long DNA loop anchorage/topoisomerase II cleavage region was found within the area under study. This region includes the end of the lamin B2 coding unit and an intergenic region where an origin of DNA replication was previously found. These observations further corroborate the hypothesis that DNA replication origins are located at or close to DNA loop anchorage regions.

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Year:  1998        PMID: 9513042     DOI: 10.1002/(sici)1097-4644(19980401)69:1<13::aid-jcb2>3.0.co;2-y

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  11 in total

1.  The loop pattern of chromosomal DNA may significantly differ in AT-rich and GC-rich isochores.

Authors:  E Svetlova; S V Razin
Journal:  Dokl Biochem Biophys       Date:  2001 Mar-Apr       Impact factor: 0.788

2.  Dynamics of association of origins of DNA replication with the nuclear matrix during the cell cycle.

Authors:  V Djeliova; G Russev; B Anachkova
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

3.  Functional interactions of DNA topoisomerases with a human replication origin.

Authors:  Gulnara Abdurashidova; Sorina Radulescu; Oscar Sandoval; Sotir Zahariev; Miltcho B Danailov; Alexander Demidovich; Laura Santamaria; Giuseppe Biamonti; Silvano Riva; Arturo Falaschi
Journal:  EMBO J       Date:  2007-02-08       Impact factor: 11.598

Review 4.  Epigenetic landscape for initiation of DNA replication.

Authors:  Vladimir V Sherstyuk; Alexander I Shevchenko; Suren M Zakian
Journal:  Chromosoma       Date:  2013-12-17       Impact factor: 4.316

Review 5.  Programming DNA replication origins and chromosome organization.

Authors:  Christelle Cayrou; Philippe Coulombe; Marcel Méchali
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

Review 6.  A requiem to the nuclear matrix: from a controversial concept to 3D organization of the nucleus.

Authors:  S V Razin; O V Iarovaia; Y S Vassetzky
Journal:  Chromosoma       Date:  2014-03-25       Impact factor: 4.316

7.  In vivo association of Ku with mammalian origins of DNA replication.

Authors:  O Novac; D Matheos; F D Araujo; G B Price; M Zannis-Hadjopoulos
Journal:  Mol Biol Cell       Date:  2001-11       Impact factor: 4.138

8.  A comparative study of S/MAR prediction tools.

Authors:  Kenneth Evans; Sascha Ott; Annika Hansen; Georgy Koentges; Lorenz Wernisch
Journal:  BMC Bioinformatics       Date:  2007-03-02       Impact factor: 3.169

9.  Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex.

Authors:  Diego Ottaviani; Elliott Lever; Richard Mitter; Tania Jones; Tim Forshew; Rossitza Christova; Eleni M Tomazou; Vardhman K Rakyan; Stephen A Krawetz; Adrian E Platts; Badmavady Segarane; Stephan Beck; Denise Sheer
Journal:  Genome Res       Date:  2008-10-10       Impact factor: 9.043

Review 10.  Relationship between DNA replication and the nuclear matrix.

Authors:  Rosemary H C Wilson; Dawn Coverley
Journal:  Genes Cells       Date:  2012-11-08       Impact factor: 1.891

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