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Literature DB >> 20066560

Programming DNA replication origins and chromosome organization.

Christelle Cayrou¹, Philippe Coulombe, Marcel Méchali.

Abstract

During each cell cycle, thousands of DNA replication origins are activated in each cell of a metazoan organism. Although they appear site-specific, their usage and organization are rather plastic. Moreover, no strict sequence specificity has been observed in contrast to bacterial or Saccharomyces cerevisiae DNA replication origins. Epigenetic regulation linked to chromatin structure, chromosome organization, and transcription has been suggested to explain how DNA replication origins are selected and recognized by replication initiation factors. In this paper, we review these epigenetic features and discuss how, during the previous mitosis, chromosomal architecture might prepare DNA replication origins for a new cell cycle.

Entities: Species

Mesh：

Substances：
Chromatin
DNA, Fungal

Year: 2010 PMID： 20066560 DOI： 10.1007/s10577-009-9105-3

Source DB: PubMed Journal: Chromosome Res ISSN： 0967-3849 Impact factor: 5.239

75 in total

Review 1. The nucleosome: from genomic organization to genomic regulation.

Authors: Sepideh Khorasanizadeh
Journal: Cell Date: 2004-01-23 Impact factor: 41.582

2. Chromatin regulates origin activity in Drosophila follicle cells.

Authors: Bhagwan D Aggarwal; Brian R Calvi
Journal: Nature Date: 2004-07-15 Impact factor: 49.962

3. Genome-scale identification of nucleosome positions in S. cerevisiae.

Authors: Guo-Cheng Yuan; Yuen-Jong Liu; Michael F Dion; Michael D Slack; Lani F Wu; Steven J Altschuler; Oliver J Rando
Journal: Science Date: 2005-06-16 Impact factor: 47.728

4. ATP-dependent chromatin remodeling shapes the DNA replication landscape.

Authors: Jack A Vincent; Tracey J Kwong; Toshio Tsukiyama
Journal: Nat Struct Mol Biol Date: 2008-04-13 Impact factor: 15.369

5. Regulation of DNA replication in vitro by the transcriptional activation domain of GAL4-VP16.

Authors: L Z Cheng; J L Workman; R E Kingston; T J Kelly
Journal: Proc Natl Acad Sci U S A Date: 1992-01-15 Impact factor: 11.205

Review 6. Nuclear organization: uniting replication foci, chromatin domains and chromosome structure.

Authors: D A Jackson
Journal: Bioessays Date: 1995-07 Impact factor: 4.345

7. DNA loop anchorage region colocalizes with the replication origin located downstream to the human gene encoding lamin B2.

Authors: M A Lagarkova; E Svetlova; M Giacca; A Falaschi; S V Razin
Journal: J Cell Biochem Date: 1998-04-01 Impact factor: 4.429

8. DNA replication initiates at domains overlapping with nuclear matrix attachment regions in the xenopus and mouse c-myc promoter.

Authors: Claire Girard-Reydet; Damien Grégoire; Yegor Vassetzky; Marcel Méchali
Journal: Gene Date: 2004-05-12 Impact factor: 3.688

9. Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells.

Authors: D A Jackson; A Pombo
Journal: J Cell Biol Date: 1998-03-23 Impact factor: 10.539

9. DNA replication is altered in Immunodeficiency Centromeric instability Facial anomalies (ICF) cells carrying DNMT3B mutations.

Authors: Erica Lana; André Mégarbané; Hélène Tourrière; Pierre Sarda; Gérard Lefranc; Mireille Claustres; Albertina De Sario
Journal: Eur J Hum Genet Date: 2012-02-29 Impact factor: 4.246

Review 10. The chromatin backdrop of DNA replication: lessons from genetics and genome-scale analyses.

Authors: Amy L Conner; Mirit I Aladjem
Journal: Biochim Biophys Acta Date: 2012-02-08

Programming DNA replication origins and chromosome organization.

Review 1. The nucleosome: from genomic organization to genomic regulation.

2. Chromatin regulates origin activity in Drosophila follicle cells.

3. Genome-scale identification of nucleosome positions in S. cerevisiae.

4. ATP-dependent chromatin remodeling shapes the DNA replication landscape.

5. Regulation of DNA replication in vitro by the transcriptional activation domain of GAL4-VP16.

Review 6. Nuclear organization: uniting replication foci, chromatin domains and chromosome structure.

7. DNA loop anchorage region colocalizes with the replication origin located downstream to the human gene encoding lamin B2.

8. DNA replication initiates at domains overlapping with nuclear matrix attachment regions in the xenopus and mouse c-myc promoter.

9. Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells.

10. Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells.

1. Cohesin organizes chromatin loops at DNA replication factories.

2. Activation of new replication foci under conditions of replication stress.

Review 3. [Regulation of DNA replication timing].

Review 4. Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control.

Review 5. DNA replication origin activation in space and time.

6. Eukaryotic origin-dependent DNA replication in vitro reveals sequential action of DDK and S-CDK kinases.

7. Differential chromatin structure encompassing replication origins in transformed and normal cells.

8. Visualization of the MCM DNA helicase at replication factories before the onset of DNA synthesis.

9. DNA replication is altered in Immunodeficiency Centromeric instability Facial anomalies (ICF) cells carrying DNMT3B mutations.

Review 10. The chromatin backdrop of DNA replication: lessons from genetics and genome-scale analyses.