Literature DB >> 9501194

Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex.

R T Nolte1, R M Conlin, S C Harrison, R S Brown.   

Abstract

The crystal structure of the six NH2-terminal zinc fingers of Xenopus laevis transcription factor IIIA (TFIIIA) bound with 31 bp of the 5S rRNA gene promoter has been determined at 3.1 A resolution. Individual zinc fingers are positioned differently in the major groove and across the minor groove of DNA to span the entire length of the duplex. These results show how TFIIIA can recognize several separated DNA sequences by using fewer fingers than necessary for continuous winding in the major groove.

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Year:  1998        PMID： 9501194      PMCID： PMC19673          DOI： 10.1073/pnas.95.6.2938

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  53 in total

1.  Sequence heterogeneity of 5 S RNA in Xenopus laevis.

Authors:  M Wegnez; R Monier; H Denis
Journal:  FEBS Lett       Date:  1972-09-01       Impact factor: 4.124

2.  Definition of the binding sites of individual zinc fingers in the transcription factor IIIA-5S RNA gene complex.

Authors:  K R Clemens; X Liao; V Wolf; P E Wright; J M Gottesfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

Review 3.  Structure, function, evolution of transcription factor IIIA.

Authors:  J S Hanas; C J Gaskins; J F Smith; M K Ogilvie
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1992

4.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

5.  Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A.

Authors:  N P Pavletich; C O Pabo
Journal:  Science       Date:  1991-05-10       Impact factor: 47.728

6.  Ribbons.

Authors:  M Carson
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Structural elements in the N-terminal half of transcription factor IIIA required for factor binding to the 5S RNA gene internal control region.

Authors:  J F Smith; J Hawkins; R E Leonard; J S Hanas
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

8.  Structure of the TFIIIA-5 S DNA complex.

Authors:  J J Hayes; T D Tullius
Journal:  J Mol Biol       Date:  1992-09-20       Impact factor: 5.469

9.  Comparison of the sequence and structure of transcription factor IIIA from Bufo americanus and Rana pipiens.

Authors:  C J Gaskins; J F Smith; M K Ogilvie; J S Hanas
Journal:  Gene       Date:  1992-10-21       Impact factor: 3.688

10.  The deduced sequence of the transcription factor TFIIIA from Saccharomyces cerevisiae reveals extensive divergence from Xenopus TFIIIA.

Authors:  J Archambault; C A Milne; K T Schappert; B Baum; J D Friesen; J Segall
Journal:  J Biol Chem       Date:  1992-02-15       Impact factor: 5.157
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  54 in total

1.  Structure-based design of an RNA-binding zinc finger.

Authors:  D J McColl; C D Honchell; A D Frankel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  5S ribosomal RNA database Y2K.

Authors:  M Szymanski; M Z Barciszewska; J Barciszewski; V A Erdmann
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Assessment of zinc finger orientations by residual dipolar coupling constants.

Authors:  V Tsui; L Zhu; T H Huang; P E Wright; D A Case
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

4.  Crystallographic snapshots along a protein-induced DNA-bending pathway.

Authors:  N C Horton; J J Perona
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

Review 5.  Macromolecular mimicry.

Authors:  P Nissen; M Kjeldgaard; J Nyborg
Journal:  EMBO J       Date:  2000-02-15       Impact factor: 11.598

Review 6.  Survey and summary: transcription by RNA polymerases I and III.

Authors:  M R Paule; R J White
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

7.  Design of polyzinc finger peptides with structured linkers.

Authors:  M Moore; Y Choo; A Klug
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

8.  Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences.

Authors:  D J Segal; B Dreier; R R Beerli; C F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

9.  Structural features of transcription factor IIIA bound to a nucleosome in solution.

Authors:  Joseph M Vitolo; Zungyoon Yang; Ravi Basavappa; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2004-01       Impact factor: 4.272

Review 10.  5 S rRNA: structure and interactions.

Authors:  Maciej Szymański; Mirosława Z Barciszewska; Volker A Erdmann; Jan Barciszewski
Journal:  Biochem J       Date:  2003-05-01       Impact factor: 3.857
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