Literature DB >> 9499408

Conversion of the omega subunit of Escherichia coli RNA polymerase into a transcriptional activator or an activation target.

S L Dove1, A Hochschild.   

Abstract

Evidence obtained in both eukaryotes and prokaryotes indicates that arbitrary contacts between DNA-bound proteins and components of the transcriptional machinery can activate transcription. Here we demonstrate that the Escherichia coli omega protein, which copurifies with RNA polymerase, can function as a transcriptional activator when linked covalently to a DNA-binding protein. We show further that omega can function as an activation target when this covalent linkage is replaced by a pair of interacting polypeptides fused to the DNA-binding protein and to omega, respectively. Our findings imply that the omega protein is associated with RNA polymerase holoenzyme in vivo, and provide support for the hypothesis that contact between a DNA-bound protein and any component of E. coli RNA polymerase can activate transcription.

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Year:  1998        PMID: 9499408      PMCID: PMC316573          DOI: 10.1101/gad.12.5.745

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  56 in total

1.  Reconstitution of bacterial DNA-dependent RNA-polymerase from isolated subunits as a tool for the elucidation of the role of the subunits in transcription.

Authors:  A Heil; W Zillig
Journal:  FEBS Lett       Date:  1970-12       Impact factor: 4.124

Review 2.  Activation and repression of E. coli promoters.

Authors:  J D Gralla
Journal:  Curr Opin Genet Dev       Date:  1996-10       Impact factor: 5.578

Review 3.  Lambda repressor: a model system for understanding protein-DNA interactions and protein stability.

Authors:  R T Sauer; S R Jordan; C O Pabo
Journal:  Adv Protein Chem       Date:  1990

4.  Overproduction and purification of the omega subunit of Escherichia coli RNA polymerase.

Authors:  D R Gentry; R R Burgess
Journal:  Protein Expr Purif       Date:  1990-09       Impact factor: 1.650

5.  Association of an activator with an RNA polymerase II holoenzyme.

Authors:  C J Hengartner; C M Thompson; J Zhang; D M Chao; S M Liao; A J Koleske; S Okamura; R A Young
Journal:  Genes Dev       Date:  1995-04-15       Impact factor: 11.361

6.  Isolation of a cDNA encoding a metal response element binding protein using a novel expression cloning procedure: the one hybrid system.

Authors:  C Inouye; P Remondelli; M Karin; S Elledge
Journal:  DNA Cell Biol       Date:  1994-07       Impact factor: 3.311

7.  DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture.

Authors:  T Gaal; W Ross; E E Blatter; H Tang; X Jia; V V Krishnan; N Assa-Munt; R H Ebright; R L Gourse
Journal:  Genes Dev       Date:  1996-01-01       Impact factor: 11.361

8.  Specificity determinants for the interaction of lambda repressor and P22 repressor dimers.

Authors:  F W Whipple; N H Kuldell; L A Cheatham; A Hochschild
Journal:  Genes Dev       Date:  1994-05-15       Impact factor: 11.361

9.  Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strength.

Authors:  L Rao; W Ross; J A Appleman; T Gaal; S Leirmo; P J Schlax; M T Record; R L Gourse
Journal:  J Mol Biol       Date:  1994-02-04       Impact factor: 5.469

10.  RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter.

Authors:  L Gaudreau; A Schmid; D Blaschke; M Ptashne; W Hörz
Journal:  Cell       Date:  1997-04-04       Impact factor: 41.582

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  59 in total

1.  A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions.

Authors:  J K Joung; E I Ramm; C O Pabo
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Isolation of peptide aptamers that inhibit intracellular processes.

Authors:  J H Blum; S L Dove; A Hochschild; J J Mekalanos
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

3.  Transcriptional activation by artificial recruitment in yeast is influenced by promoter architecture and downstream sequences.

Authors:  L Gaudreau; M Keaveney; J Nevado; Z Zaman; G O Bryant; K Struhl; M Ptashne
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

4.  Mechanism for a transcriptional activator that works at the isomerization step.

Authors:  S L Dove; F W Huang; A Hochschild
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

5.  Magnitude of the CREB-dependent transcriptional response is determined by the strength of the interaction between the kinase-inducible domain of CREB and the KIX domain of CREB-binding protein.

Authors:  A J Shaywitz; S L Dove; J M Kornhauser; A Hochschild; M E Greenberg
Journal:  Mol Cell Biol       Date:  2000-12       Impact factor: 4.272

6.  A regulator that inhibits transcription by targeting an intersubunit interaction of the RNA polymerase holoenzyme.

Authors:  B D Gregory; B E Nickels; S J Garrity; E Severinova; L Minakhin; R J Bieber Urbauer; J L Urbauer; T Heyduk; K Severinov; A Hochschild
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-22       Impact factor: 11.205

7.  Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica.

Authors:  Joel A Malek; Jamey M Wierzbowski; Wei Tao; Stephanie A Bosak; David J Saranga; Lynn Doucette-Stamm; Douglas R Smith; Paul J McEwan; Kevin J McKernan
Journal:  Nucleic Acids Res       Date:  2004-02-10       Impact factor: 16.971

8.  Deletion of the gene rpoZ, encoding the omega subunit of RNA polymerase, in Mycobacterium smegmatis results in fragmentation of the beta' subunit in the enzyme assembly.

Authors:  Renjith Mathew; Madhugiri Ramakanth; Dipankar Chatterji
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

9.  The bacteriophage T4 AsiA protein contacts the beta-flap domain of RNA polymerase.

Authors:  Andy H Yuan; Bryce E Nickels; Ann Hochschild
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-06       Impact factor: 11.205

Review 10.  Using synthetic biology to make cells tomorrow's test tubes.

Authors:  Hernan G Garcia; Robert C Brewster; Rob Phillips
Journal:  Integr Biol (Camb)       Date:  2016-03-08       Impact factor: 2.192

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