Literature DB >> 16159791

Deletion of the gene rpoZ, encoding the omega subunit of RNA polymerase, in Mycobacterium smegmatis results in fragmentation of the beta' subunit in the enzyme assembly.

Renjith Mathew1, Madhugiri Ramakanth, Dipankar Chatterji.   

Abstract

A deletion mutation in the gene rpoZ of Mycobacterium smegmatis causes reduced growth rate and a change in colony morphology. During purification of RNA polymerase from the mutant strain, the beta' subunit undergoes fragmentation but the fragments remain associated with the enzyme and maintain it in an active state until the whole destabilized assembly breaks down in the final step of purification. Complementation of the mutant strain with an integrated copy of the wild-type rpoZ brings back the wild-type colony morphology and improves the growth rate and activity of the enzyme, and the integrity of the beta' subunit remains unaffected.

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Year:  2005        PMID: 16159791      PMCID: PMC1236636          DOI: 10.1128/JB.187.18.6565-6570.2005

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  35 in total

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Authors:  L Minakhin; S Bhagat; A Brunning; E A Campbell; S A Darst; R H Ebright; K Severinov
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Mapping of subunit-subunit contact surfaces on the beta' subunit of Escherichia coli RNA polymerase.

Authors:  A Katayama; N Fujita; A Ishihama
Journal:  J Biol Chem       Date:  2000-02-04       Impact factor: 5.157

3.  Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: a case study with omega-beta' interaction.

Authors:  Pallavi Ghosh; Chandrashekharan Ramakrishnan; Dipankar Chatterji
Journal:  Biophys Chem       Date:  2003-03-25       Impact factor: 2.352

4.  GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the omega subunit in vivo.

Authors:  K Mukherjee; H Nagai; N Shimamoto; D Chatterji
Journal:  Eur J Biochem       Date:  1999-11

5.  Separation and characterization of the subunits of ribonucleic acid polymerase.

Authors:  R R Burgess
Journal:  J Biol Chem       Date:  1969-11-25       Impact factor: 5.157

6.  On the stabilization of ribonuclease S-protein by ribonuclease S-peptide.

Authors:  I Kato; C B Anfinsen
Journal:  J Biol Chem       Date:  1969-02-10       Impact factor: 5.157

7.  The rpoZ gene, encoding the RNA polymerase omega subunit, is required for antibiotic production and morphological differentiation in Streptomyces kasugaensis.

Authors:  Ikuo Kojima; Kano Kasuga; Masayuki Kobayashi; Akira Fukasawa; Satoshi Mizuno; Akira Arisawa; Hisayoshi Akagawa
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

8.  Escherichia coli RNA polymerase subunit omega and its N-terminal domain bind full-length beta' to facilitate incorporation into the alpha2beta subassembly.

Authors:  P Ghosh; A Ishihama; D Chatterji
Journal:  Eur J Biochem       Date:  2001-09

9.  Identification of proteins involved in the heat stress response of Bacillus cereus ATCC 14579.

Authors:  Paula M Periago; Willem van Schaik; Tjakko Abee; Jeroen A Wouters
Journal:  Appl Environ Microbiol       Date:  2002-07       Impact factor: 4.792

10.  RNA polymerase subunit requirements for activation by the enhancer-binding protein Rhodobacter capsulatus NtrC.

Authors:  Cynthia L Richard; Animesh Tandon; Nathaniel R Sloan; Robert G Kranz
Journal:  J Biol Chem       Date:  2003-06-06       Impact factor: 5.157

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  10 in total

Review 1.  Small things considered: the small accessory subunits of RNA polymerase in Gram-positive bacteria.

Authors:  Andy Weiss; Lindsey N Shaw
Journal:  FEMS Microbiol Rev       Date:  2015-04-14       Impact factor: 16.408

2.  The ω Subunit Governs RNA Polymerase Stability and Transcriptional Specificity in Staphylococcus aureus.

Authors:  Andy Weiss; Brittney D Moore; Miguel H J Tremblay; Dale Chaput; Astrid Kremer; Lindsey N Shaw
Journal:  J Bacteriol       Date:  2016-12-28       Impact factor: 3.490

3.  The RNA polymerase omega factor RpoZ is regulated by PhoP and has an important role in antibiotic biosynthesis and morphological differentiation in Streptomyces coelicolor.

Authors:  Fernando Santos-Beneit; Mónica Barriuso-Iglesias; Lorena T Fernández-Martínez; Miriam Martínez-Castro; Alberto Sola-Landa; Antonio Rodríguez-García; Juan F Martín
Journal:  Appl Environ Microbiol       Date:  2011-09-09       Impact factor: 4.792

4.  Acclimation to High CO2 Requires the ω Subunit of the RNA Polymerase in Synechocystis.

Authors:  Juha Kurkela; Kaisa Hakkila; Taras Antal; Taina Tyystjärvi
Journal:  Plant Physiol       Date:  2017-03-28       Impact factor: 8.340

5.  Identification and characterization of the dps promoter of Mycobacterium smegmatis: promoter recognition by stress-specific extracytoplasmic function sigma factors sigmaH and sigmaF.

Authors:  Rakhi Pait Chowdhury; Surbhi Gupta; Dipankar Chatterji
Journal:  J Bacteriol       Date:  2007-10-05       Impact factor: 3.490

6.  Association of ω with the C-Terminal Region of the β' Subunit Is Essential for Assembly of RNA Polymerase in Mycobacterium tuberculosis.

Authors:  Chunyou Mao; Yan Zhu; Pei Lu; Lipeng Feng; Shiyun Chen; Yangbo Hu
Journal:  J Bacteriol       Date:  2018-05-24       Impact factor: 3.490

7.  Comparing outdated and updated textbook figures helps introduce undergraduates to primary literature.

Authors:  Verónica A Segarra; Scott Tanner
Journal:  J Microbiol Biol Educ       Date:  2015-05-01

8.  Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach.

Authors:  María del Sol Cuenca; Amalia Roca; Carlos Molina-Santiago; Estrella Duque; Jean Armengaud; María R Gómez-Garcia; Juan L Ramos
Journal:  Microb Biotechnol       Date:  2016-01       Impact factor: 5.813

Review 9.  Validation of Omega Subunit of RNA Polymerase as a Functional Entity.

Authors:  Unnatiben Rajeshbhai Patel; Sudhanshu Gautam; Dipankar Chatterji
Journal:  Biomolecules       Date:  2020-11-23

10.  Mycobacterium tuberculosis Rho is an NTPase with distinct kinetic properties and a novel RNA-binding subdomain.

Authors:  Anirban Mitra; Rachel Misquitta; Valakunja Nagaraja
Journal:  PLoS One       Date:  2014-09-17       Impact factor: 3.240

  10 in total

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