Literature DB >> 9484452

U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize.

C H Ko1, V Brendel, R D Taylor, V Walbot.   

Abstract

Using a large set of plant gene sequences we compared individual introns to their flanking exons. Both Zea mays and Arabidopsis thaliana introns are U-rich but display no apparent bias for A. We identified fifteen 11-mer U-rich motifs as frequent elements of maize introns, and these are virtually absent from exons. By mutagenesis, we show that the single U-rich motif in the Bronze2 intron of maize plays a key role in intron processing in vivo.

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Year:  1998        PMID: 9484452     DOI: 10.1023/a:1005932620374

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  36 in total

Review 1.  Information contents and dinucleotide compositions of plant intron sequences vary with evolutionary origin.

Authors:  O White; C Soderlund; P Shanmugan; C Fields
Journal:  Plant Mol Biol       Date:  1992-09       Impact factor: 4.076

2.  Chance and statistical significance in protein and DNA sequence analysis.

Authors:  S Karlin; V Brendel
Journal:  Science       Date:  1992-07-03       Impact factor: 47.728

3.  A combinatorial role for exon, intron and splice site sequences in splicing in maize.

Authors:  J C Carle-Urioste; V Brendel; V Walbot
Journal:  Plant J       Date:  1997-06       Impact factor: 6.417

4.  Nuclear pre-mRNA introns: analysis and comparison of intron sequences from Tetrahymena thermophila and other eukaryotes.

Authors:  C Csank; F M Taylor; D W Martindale
Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

5.  Addition of A- and U-rich sequence increases the splicing efficiency of a deleted form of a maize intron.

Authors:  K R Luehrsen; V Walbot
Journal:  Plant Mol Biol       Date:  1994-02       Impact factor: 4.076

Review 6.  Nuclear pre-mRNA processing in higher plants.

Authors:  K R Luehrsen; S Taha; V Walbot
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1994

7.  Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences.

Authors:  S Schbath; B Prum; E de Turckheim
Journal:  J Comput Biol       Date:  1995       Impact factor: 1.479

8.  Pre-mRNA splicing in plants: characterization of Ser/Arg splicing factors.

Authors:  S Lopato; A Mayeda; A R Krainer; A Barta
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-02       Impact factor: 11.205

9.  Molecular characterization of the spliceosomal proteins U1A and U2B" from higher plants.

Authors:  G G Simpson; G P Clark; H M Rothnie; W Boelens; W van Venrooij; J W Brown
Journal:  EMBO J       Date:  1995-09-15       Impact factor: 11.598

10.  Identification of a plant serine-arginine-rich protein similar to the mammalian splicing factor SF2/ASF.

Authors:  G Lazar; T Schaal; T Maniatis; H M Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-15       Impact factor: 11.205

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  25 in total

1.  UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation.

Authors:  M H Lambermon; G G Simpson; D A Wieczorek Kirk; M Hemmings-Mieszczak; U Klahre; W Filipowicz
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

2.  Requirements for mini-exon inclusion in potato invertase mRNAs provides evidence for exon-scanning interactions in plants.

Authors:  C G Simpson; P E Hedley; J A Watters; G P Clark; C McQuade; G C Machray; J W Brown
Journal:  RNA       Date:  2000-03       Impact factor: 4.942

3.  Test of the combinatorial model of intron recognition in a native maize gene.

Authors:  M J Latijnhouwers; C F Pairoba; V Brendel; V Walbot; J C Carle-Urisote
Journal:  Plant Mol Biol       Date:  1999-11       Impact factor: 4.076

4.  Finding your knockout: reverse genetics techniques for plants.

Authors:  Sean T May; Deborah Clements; Malcolm J Bennett
Journal:  Mol Biotechnol       Date:  2002-02       Impact factor: 2.695

5.  Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon.

Authors:  Craig G Simpson; Graham Thow; Gillian P Clark; S Nikki Jennings; Jenny A Watters; John W S Brown
Journal:  RNA       Date:  2002-01       Impact factor: 4.942

6.  Requirements for intron-mediated enhancement of gene expression in Arabidopsis.

Authors:  Alan B Rose
Journal:  RNA       Date:  2002-11       Impact factor: 4.942

7.  Genomewide comparative analysis of alternative splicing in plants.

Authors:  Bing-Bing Wang; Volker Brendel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

8.  Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.

Authors:  Marie Touchon; Alain Arneodo; Yves d'Aubenton-Carafa; Claude Thermes
Journal:  Nucleic Acids Res       Date:  2004-09-23       Impact factor: 16.971

9.  ZmMPK17, a novel maize group D MAP kinase gene, is involved in multiple stress responses.

Authors:  Jiaowen Pan; Maoying Zhang; Xiangpei Kong; Xin Xing; Yukun Liu; Yan Zhou; Yang Liu; Liping Sun; Dequan Li
Journal:  Planta       Date:  2011-10-18       Impact factor: 4.116

10.  Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene.

Authors:  Ying Chen; Wolfgang Stephan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-12       Impact factor: 11.205

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