Literature DB >> 9482856

SR proteins are sufficient for exon bridging across an intron.

J M Stark1, D P Bazett-Jones, M Herfort, M B Roth.   

Abstract

We have developed a defined system to characterize the role of SR proteins and exonic enhancers in directly promoting splice-site interactions across an intron. Using RNA affinity chromatography, we find that SR proteins alone are sufficient to promote the specific association of the enhancer-containing exon 5 with the adjoining exon 6 from avian cardiac troponin-T. Direct visualization of this exon/exon association by electron spectroscopic imaging shows it to be highly specific. Furthermore, using in vivo characterized mutants of exon 5, we also show that this exon/exon association depends on the splicing enhancer within exon 5. These results suggest a model by which SR proteins may function through exonic enhancers to directly promote exon bridging.

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Year:  1998        PMID: 9482856      PMCID: PMC19283          DOI: 10.1073/pnas.95.5.2163

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  SR proteins: a conserved family of pre-mRNA splicing factors.

Authors:  A M Zahler; W S Lane; J A Stolk; M B Roth
Journal:  Genes Dev       Date:  1992-05       Impact factor: 11.361

2.  Purification of RNA and RNA-protein complexes by an R17 coat protein affinity method.

Authors:  V J Bardwell; M Wickens
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

Review 3.  Electron spectroscopic imaging of chromatin and other nucleoprotein complexes.

Authors:  D P Bazett-Jones
Journal:  Electron Microsc Rev       Date:  1992

4.  Distinct functions of SR proteins in alternative pre-mRNA splicing.

Authors:  A M Zahler; K M Neugebauer; W S Lane; M B Roth
Journal:  Science       Date:  1993-04-09       Impact factor: 47.728

5.  Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected].

Authors:  J Valcárcel; R K Gaur; R Singh; M R Green
Journal:  Science       Date:  1996-09-20       Impact factor: 47.728

6.  In vitro splicing of cardiac troponin T precursors. Exon mutations disrupt splicing of the upstream intron.

Authors:  T A Cooper
Journal:  J Biol Chem       Date:  1992-03-15       Impact factor: 5.157

7.  ompT encodes the Escherichia coli outer membrane protease that cleaves T7 RNA polymerase during purification.

Authors:  J Grodberg; J J Dunn
Journal:  J Bacteriol       Date:  1988-03       Impact factor: 3.490

8.  Genomic structure of the human caldesmon gene.

Authors:  K Hayashi; H Yano; T Hashida; R Takeuchi; O Takeda; K Asada; E Takahashi; I Kato; K Sobue
Journal:  Proc Natl Acad Sci U S A       Date:  1992-12-15       Impact factor: 11.205

9.  The role of exon sequences in splice site selection.

Authors:  A Watakabe; K Tanaka; Y Shimura
Journal:  Genes Dev       Date:  1993-03       Impact factor: 11.361

10.  Drosophila doublesex gene controls somatic sexual differentiation by producing alternatively spliced mRNAs encoding related sex-specific polypeptides.

Authors:  K C Burtis; B S Baker
Journal:  Cell       Date:  1989-03-24       Impact factor: 41.582

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  17 in total

1.  Identification of a bidirectional splicing enhancer: differential involvement of SR proteins in 5' or 3' splice site activation.

Authors:  C F Bourgeois; M Popielarz; G Hildwein; J Stevenin
Journal:  Mol Cell Biol       Date:  1999-11       Impact factor: 4.272

2.  RNA molecules containing exons originating from different members of the cytochrome P450 2C gene subfamily (CYP2C) in human epidermis and liver.

Authors:  P G Zaphiropoulos
Journal:  Nucleic Acids Res       Date:  1999-07-01       Impact factor: 16.971

3.  Identification and characterization of a novel serine-arginine-rich splicing regulatory protein.

Authors:  D C Barnard; J G Patton
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

4.  Alternative splicing of U12-dependent introns in vivo responds to purine-rich enhancers.

Authors:  R C Dietrich; G C Shukla; J D Fuller; R A Padgett
Journal:  RNA       Date:  2001-10       Impact factor: 4.942

5.  Molecular immunolabeling with recombinant single-chain variable fragment (scFv) antibodies designed with metal-binding domains.

Authors:  Marek Malecki; Annie Hsu; Lynn Truong; Sylvia Sanchez
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-26       Impact factor: 11.205

6.  The 65 and 110 kDa SR-related proteins of the U4/U6.U5 tri-snRNP are essential for the assembly of mature spliceosomes.

Authors:  O V Makarova; E M Makarov; R Lührmann
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

7.  Multiple roles for SR proteins in trans splicing.

Authors:  Suzanne Furuyama; James P Bruzik
Journal:  Mol Cell Biol       Date:  2002-08       Impact factor: 4.272

Review 8.  AT-AC pre-mRNA splicing mechanisms and conservation of minor introns in voltage-gated ion channel genes.

Authors:  Q Wu; A R Krainer
Journal:  Mol Cell Biol       Date:  1999-05       Impact factor: 4.272

Review 9.  The RNAissance family: SR proteins as multifaceted regulators of gene expression.

Authors:  Jonathan M Howard; Jeremy R Sanford
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-08-22       Impact factor: 9.957

10.  Purine-rich enhancers function in the AT-AC pre-mRNA splicing pathway and do so independently of intact U1 snRNP.

Authors:  Q Wu; A R Krainer
Journal:  RNA       Date:  1998-12       Impact factor: 4.942

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