Literature DB >> 9469822

DNA tetraplex formation in the control region of c-myc.

T Simonsson1, P Pecinka, M Kubista.   

Abstract

The c-myc oncogene is one of the most commonly malfunctioning genes in human cancers, and is an attractive target for anti-gene therapy. Although synthetic oligonucleotides designed to silence c-myc expression via one of its major control elements function well in vitro, their mode of action has been indefinite. Here we show that the targeted control element adopts an intrastrand fold-back DNA tetraplex, which requires potassium ions for stability in vitro. We believe formation of the tetraplex is important for c-myc activation in vivo, and propose a transcription initiation mechanism that explains how anti-gene therapy silence c-myc at the molecular level.

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Year:  1998        PMID: 9469822      PMCID: PMC147388          DOI: 10.1093/nar/26.5.1167

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  50 in total

1.  Loss of the amino-terminal helix-loop-helix domain of the vav proto-oncogene activates its transforming potential.

Authors:  S Katzav; J L Cleveland; H E Heslop; D Pulido
Journal:  Mol Cell Biol       Date:  1991-04       Impact factor: 4.272

Review 2.  Structure and function of telomeres.

Authors:  E H Blackburn
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

3.  Homogeneously staining chromosomal regions contain amplified copies of an abundantly expressed cellular oncogene (c-myc) in malignant neuroendocrine cells from a human colon carcinoma.

Authors:  K Alitalo; M Schwab; C C Lin; H E Varmus; J M Bishop
Journal:  Proc Natl Acad Sci U S A       Date:  1983-03       Impact factor: 11.205

4.  The highly polymorphic region near the human insulin gene is composed of simple tandemly repeating sequences.

Authors:  G I Bell; M J Selby; W J Rutter
Journal:  Nature       Date:  1982-01-07       Impact factor: 49.962

5.  Complete nucleotide sequence of a human c-onc gene: deduced amino acid sequence of the human c-fos protein.

Authors:  F van Straaten; R Müller; T Curran; C Van Beveren; I M Verma
Journal:  Proc Natl Acad Sci U S A       Date:  1983-06       Impact factor: 11.205

6.  Chromatin structure and protein binding in the putative regulatory region of the c-myc gene in Burkitt lymphoma.

Authors:  U Siebenlist; L Hennighausen; J Battey; P Leder
Journal:  Cell       Date:  1984-06       Impact factor: 41.582

7.  Expression of cellular oncogenes in human malignancies.

Authors:  D J Slamon; J B deKernion; I M Verma; M J Cline
Journal:  Science       Date:  1984-04-20       Impact factor: 47.728

8.  Murine T lymphomas with retroviral inserts in the chromosomal 15 locus for plasmacytoma variant translocations.

Authors:  M Graham; J M Adams; S Cory
Journal:  Nature       Date:  1985 Apr 25-May 1       Impact factor: 49.962

9.  The structure of the human c-fes/fps proto-oncogene.

Authors:  A J Roebroek; J A Schalken; J S Verbeek; A M Van den Ouweland; C Onnekink; H P Bloemers; W J Van de Ven
Journal:  EMBO J       Date:  1985-11       Impact factor: 11.598

10.  Nucleotide sequence of the human c-myc locus: provocative open reading frame within the first exon.

Authors:  C Gazin; S Dupont de Dinechin; A Hampe; J M Masson; P Martin; D Stehelin; F Galibert
Journal:  EMBO J       Date:  1984-02       Impact factor: 11.598

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  171 in total

1.  Identification of two human nuclear proteins that recognise the cytosine-rich strand of human telomeres in vitro.

Authors:  L Lacroix; H Liénard; E Labourier; M Djavaheri-Mergny; J Lacoste; H Leffers; J Tazi; C Hélène; J L Mergny
Journal:  Nucleic Acids Res       Date:  2000-04-01       Impact factor: 16.971

2.  G-quartets assembly within a G-rich DNA flap. A possible event at the center of the HIV-1 genome.

Authors:  Sébastien Lyonnais; Candide Hounsou; Marie-Paule Teulade-Fichou; Josette Jeusset; Eric Le Cam; Gilles Mirambeau
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

3.  Resolution of quadruplex polymorphism by size-exclusion chromatography.

Authors:  M Clarke Miller; John O Trent
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2011-06

4.  Engineering the quadruplex fold: nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes.

Authors:  Chung-Fei Tang; Richard H Shafer
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

5.  Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.

Authors:  Adam Siddiqui-Jain; Cory L Grand; David J Bearss; Laurence H Hurley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-23       Impact factor: 11.205

6.  NMR solution structure of a parallel LNA quadruplex.

Authors:  Antonio Randazzo; Veronica Esposito; Oliver Ohlenschläger; Ramadurai Ramachandran; Luciano Mayola
Journal:  Nucleic Acids Res       Date:  2004-06-04       Impact factor: 16.971

7.  Destabilization of tetraplex structures of the fragile X repeat sequence (CGG)n is mediated by homolog-conserved domains in three members of the hnRNP family.

Authors:  Samer Khateb; Pnina Weisman-Shomer; Inbal Hershco; Lawrence A Loeb; Michael Fry
Journal:  Nucleic Acids Res       Date:  2004-08-09       Impact factor: 16.971

8.  Demonstration that drug-targeted down-regulation of MYC in non-Hodgkins lymphoma is directly mediated through the promoter G-quadruplex.

Authors:  Robert V Brown; Forest L Danford; Vijay Gokhale; Laurence H Hurley; Tracy A Brooks
Journal:  J Biol Chem       Date:  2011-09-28       Impact factor: 5.157

Review 9.  DNA secondary structures: stability and function of G-quadruplex structures.

Authors:  Matthew L Bochman; Katrin Paeschke; Virginia A Zakian
Journal:  Nat Rev Genet       Date:  2012-10-03       Impact factor: 53.242

10.  Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.

Authors:  Pooja Rawal; Veera Bhadra Rao Kummarasetti; Jinoy Ravindran; Nirmal Kumar; Kangkan Halder; Rakesh Sharma; Mitali Mukerji; Swapan Kumar Das; Shantanu Chowdhury
Journal:  Genome Res       Date:  2006-05       Impact factor: 9.043

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