Literature DB >> 9461082

Correlation between binding and dynamics at SH2 domain interfaces.

L E Kay1, D R Muhandiram, G Wolf, S E Shoelson, J D Forman-Kay.   

Abstract

Protein recognition is a key determinant in regulating biological processes. Structures of complexes of interacting proteins provide significant insights into the mechanism of specific recognition. However, studies performed by modifying residues within a protein interface demonstrate that binding is not fully explained by these static pictures. Thus, structural data alone was not predictive of affinities in binding studies of phospholipase Cgamma1 and Syp phosphatase SH2 domains with phosphopeptides. NMR relaxation experiments probing dynamics of methyl groups of these complexes indicate a correlation between binding energy and restriction of motion at the interfacial region responsible for specific binding.

Mesh:

Substances:

Year:  1998        PMID: 9461082     DOI: 10.1038/nsb0298-156

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  36 in total

1.  Ligand-induced changes in dynamics in the RT loop of the C-terminal SH3 domain of Sem-5 indicate cooperative conformational coupling.

Authors:  Josephine C Ferreon; Vincent J Hilser
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

2.  Specificity and affinity motifs for Grb2 SH2-ligand interactions.

Authors:  Helmut W H G Kessels; Alister C Ward; Ton N M Schumacher
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-25       Impact factor: 11.205

3.  Backbone dynamics of the 8 kDa dynein light chain dimer reveals molecular basis of the protein's functional diversity.

Authors:  Jing-Song Fan; Qiang Zhang; Hidehito Tochio; Mingjie Zhang
Journal:  J Biomol NMR       Date:  2002-06       Impact factor: 2.835

4.  Applications of NMR spin relaxation methods for measuring biological motions.

Authors:  Guruvasuthevan R Thuduppathy; R Blake Hill
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

5.  The response of internal dynamics to hydrophobic core mutations in the SH3 domain from the Fyn tyrosine kinase.

Authors:  Anthony Mittermaier; Lewis E Kay
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

6.  NMR backbone dynamics of VEK-30 bound to the human plasminogen kringle 2 domain.

Authors:  Min Wang; Mary Prorok; Francis J Castellino
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

7.  Analysis of deuterium relaxation-derived methyl axis order parameters and correlation with local structure.

Authors:  A Mittermaier; L E Kay; J D Forman-Kay
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

8.  Loops govern SH2 domain specificity by controlling access to binding pockets.

Authors:  Tomonori Kaneko; Haiming Huang; Bing Zhao; Lei Li; Huadong Liu; Courtney K Voss; Chenggang Wu; Martin R Schiller; Shawn Shun-Cheng Li
Journal:  Sci Signal       Date:  2010-05-04       Impact factor: 8.192

9.  Effect of hydrophobic core packing on sidechain dynamics.

Authors:  E C Johnson; T M Handel
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

10.  Dynamically Coupled Residues within the SH2 Domain of FYN Are Key to Unlocking Its Activity.

Authors:  Radu Huculeci; Elisa Cilia; Agatha Lyczek; Lieven Buts; Klaartje Houben; Markus A Seeliger; Nico van Nuland; Tom Lenaerts
Journal:  Structure       Date:  2016-09-29       Impact factor: 5.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.