Literature DB >> 27692963

Dynamically Coupled Residues within the SH2 Domain of FYN Are Key to Unlocking Its Activity.

Radu Huculeci1, Elisa Cilia2, Agatha Lyczek3, Lieven Buts1, Klaartje Houben4, Markus A Seeliger3, Nico van Nuland5, Tom Lenaerts6.   

Abstract

Src kinase activity is controlled by various mechanisms involving a coordinated movement of kinase and regulatory domains. Notwithstanding the extensive knowledge related to the backbone dynamics, little is known about the more subtle side-chain dynamics within the regulatory domains and their role in the activation process. Here, we show through experimental methyl dynamic results and predicted changes in side-chain conformational couplings that the SH2 structure of Fyn contains a dynamic network capable of propagating binding information. We reveal that binding the phosphorylated tail of Fyn perturbs a residue cluster near the linker connecting the SH2 and SH3 domains of Fyn, which is known to be relevant in the regulation of the activity of Fyn. Biochemical perturbation experiments validate that those residues are essential for inhibition of Fyn, leading to a gain of function upon mutation. These findings reveal how side-chain dynamics may facilitate the allosteric regulation of the different members of the Src kinase family.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Fyn; SH2; Src-like kinases; long-range communication; methyl dynamics; prediction; regulation

Mesh:

Substances:

Year:  2016        PMID: 27692963      PMCID: PMC5093032          DOI: 10.1016/j.str.2016.08.016

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  55 in total

1.  Loops govern SH2 domain specificity by controlling access to binding pockets.

Authors:  Tomonori Kaneko; Haiming Huang; Bing Zhao; Lei Li; Huadong Liu; Courtney K Voss; Chenggang Wu; Martin R Schiller; Shawn Shun-Cheng Li
Journal:  Sci Signal       Date:  2010-05-04       Impact factor: 8.192

Review 2.  Structure and regulation of Src family kinases.

Authors:  Titus J Boggon; Michael J Eck
Journal:  Oncogene       Date:  2004-10-18       Impact factor: 9.867

3.  Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions.

Authors:  Nikolai R Skrynnikov; Oscar Millet; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

4.  The crystal structure of a c-Src complex in an active conformation suggests possible steps in c-Src activation.

Authors:  Sandra W Cowan-Jacob; Gabriele Fendrich; Paul W Manley; Wolfgang Jahnke; Doriano Fabbro; Janis Liebetanz; Thomas Meyer
Journal:  Structure       Date:  2005-06       Impact factor: 5.006

5.  High yield bacterial expression of active c-Abl and c-Src tyrosine kinases.

Authors:  Markus A Seeliger; Matthew Young; M Nidanie Henderson; Patricia Pellicena; David S King; Arnold M Falick; John Kuriyan
Journal:  Protein Sci       Date:  2005-10-31       Impact factor: 6.725

6.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

7.  Probing the "two-pronged plug two-holed socket" model for the mechanism of binding of the Src SH2 domain to phosphotyrosyl peptides: a thermodynamic study.

Authors:  J M Bradshaw; R A Grucza; J E Ladbury; G Waksman
Journal:  Biochemistry       Date:  1998-06-23       Impact factor: 3.162

8.  Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure.

Authors:  Tom Lenaerts; Jesper Ferkinghoff-Borg; Francois Stricher; Luis Serrano; Joost W H Schymkowitz; Frederic Rousseau
Journal:  BMC Struct Biol       Date:  2008-10-08

9.  MoKCa database--mutations of kinases in cancer.

Authors:  Christopher J Richardson; Qiong Gao; Costas Mitsopoulous; Marketa Zvelebil; Laurence H Pearl; Frances M G Pearl
Journal:  Nucleic Acids Res       Date:  2008-11-05       Impact factor: 16.971

Review 10.  Fyn kinase inhibition as a novel therapy for Alzheimer's disease.

Authors:  Haakon B Nygaard; Christopher H van Dyck; Stephen M Strittmatter
Journal:  Alzheimers Res Ther       Date:  2014-02-05       Impact factor: 6.982

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  4 in total

Review 1.  Dynamic regulatory features of the protein tyrosine kinases.

Authors:  Neha Amatya; David Yin-Wei Lin; Amy H Andreotti
Journal:  Biochem Soc Trans       Date:  2019-08-08       Impact factor: 5.407

2.  Fyn nanoclustering requires switching to an open conformation and is enhanced by FTLD-Tau biomolecular condensates.

Authors:  Ramón Martínez-Mármol; Christopher Small; Anmin Jiang; Tishila Palliyaguru; Tristan P Wallis; Rachel S Gormal; Jean-Baptiste Sibarita; Jürgen Götz; Frédéric A Meunier
Journal:  Mol Psychiatry       Date:  2022-10-18       Impact factor: 13.437

3.  The SRC-family tyrosine kinase HCK shapes the landscape of SKAP2 interactome.

Authors:  Jean-François Bureau; Patricia Cassonnet; Laura Grange; Julien Dessapt; Louis Jones; Caroline Demeret; Anavaj Sakuntabhai; Yves Jacob
Journal:  Oncotarget       Date:  2018-02-06

4.  The dynamics of free and phosphopeptide-bound Grb2-SH2 reveals two dynamically independent subdomains and an encounter complex with fuzzy interactions.

Authors:  Karoline Sanches; Icaro P Caruso; Fabio C L Almeida; Fernando A Melo
Journal:  Sci Rep       Date:  2020-08-03       Impact factor: 4.379

  4 in total

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