Literature DB >> 9435268

The estimation of rapid rate constants from current-amplitude frequency distributions of single-channel recordings.

P J White1, M S Ridout.   

Abstract

A method is described for estimating rapid rate constants from the distributions of current amplitude observed in single-channel electrical recordings. It has the advantages over previous, similar approaches that it can accommodate both multistate kinetic models and adjustable filtering of the data using an 8-pole Bessel filter. The method is conceptually straightforward: the observed distributions of current amplitude are compared with theoretical distributions derived by combining several simplifying assumptions about the underlying stochastic process with a model of the filter and electrical noise. Parameters are estimated by approximate maximum likelihood. The method was used successfully to estimate rate constants for both a simple two-state kinetic model (the transitions between open and closed states during the rapid gating of an outward-rectifying K(+)-selective channel in the plasma membrane of Acetabularia) and a complex multistate kinetic model (the blockade of the maxi cation channel in the plasma membrane of rye roots by verapamil). For the two-state model, parameters were estimated well, provided that they were not too fast or too slow in relation to the sampling rate. In the three-state model the precision of estimates depended in a complex way on the values of all rate parameters in the model.

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Year:  1998        PMID: 9435268     DOI: 10.1007/s002329900319

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  6 in total

Review 1.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Authors:  Indra Schroeder
Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

2.  The power of two-dimensional dwell-time analysis for model discrimination, temporal resolution, multichannel analysis and level detection.

Authors:  Tobias Huth; Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2007-06-06       Impact factor: 1.843

3.  Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  Eur Biophys J       Date:  2009-07-21       Impact factor: 1.733

4.  Interference of shot noise of open-channel current with analysis of fast gating: patchers do not (Yet) have to care.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2009-06-24       Impact factor: 1.843

Review 5.  High bandwidth approaches in nanopore and ion channel recordings - A tutorial review.

Authors:  Andreas J W Hartel; Siddharth Shekar; Peijie Ong; Indra Schroeder; Gerhard Thiel; Kenneth L Shepard
Journal:  Anal Chim Acta       Date:  2019-01-25       Impact factor: 6.558

6.  Strengths and limits of Beta distributions as a means of reconstructing the true single-channel current in patch clamp time series with fast gating.

Authors:  I Schroeder; U-P Hansen
Journal:  J Membr Biol       Date:  2006-08-14       Impact factor: 2.426

  6 in total

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