Literature DB >> 942858

Structure of wye (Yt base) and wyosine (Yt) from Torulopsis utilis phenylalanine transfer ribonucleic acid.

H Kasai, M Goto, K Ikeda, M Zama, Y Mizuno, S Takemura, S Matsuura, T Sugimoto, T Goto.   

Abstract

A fluorescent base wye (Yt base) was isolated from Torulopsis utilis tRNAPhe. The structure was established as 4,9-dihydro-4,6-dimethyl-9-oxo-1H-imidazo[1,2-alpha]purine based on ultraviolet (uv), nuclear magnetic resonance (NMR), and mass spectra, and by direct comparison with synthetic material. The nucleoside, wyosine (Yt), was isolated from purified tRNAPhe by enzymatic degradations followed by column and thin-layer chromatographies. The structure of wyosine is proposed as 3-ribofuranosyl-4,9-dihydro-4,6-dimethyl-9-oxo-1H-imidazol[1,2-alpha]purine (the ribosyl group is attached to the N-9 position of guanine nucleus) on the basis of comparison with model compounds.

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Year:  1976        PMID: 942858     DOI: 10.1021/bi00649a027

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

1.  Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA.

Authors:  Akiko Noma; Yohei Kirino; Yoshiho Ikeuchi; Tsutomu Suzuki
Journal:  EMBO J       Date:  2006-04-27       Impact factor: 11.598

2.  Resolution of multiexponential spectral relaxation of Yt-base by global analysis of collisionally quenched samples.

Authors:  H Szmacinski; I Gryczynski; J R Lakowicz
Journal:  J Fluoresc       Date:  1996-09       Impact factor: 2.217

Review 3.  Summary: the modified nucleosides of RNA.

Authors:  P A Limbach; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

4.  TYW1: A Radical SAM Enzyme Involved in the Biosynthesis of Wybutosine Bases.

Authors:  Anthony P Young; Vahe Bandarian
Journal:  Methods Enzymol       Date:  2018-06-06       Impact factor: 1.600

5.  4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate.

Authors:  Phanélie Perche-Letuvée; Velavan Kathirvelu; Gustav Berggren; Martin Clemancey; Jean-Marc Latour; Vincent Maurel; Thierry Douki; Jean Armengaud; Etienne Mulliez; Marc Fontecave; Ricardo Garcia-Serres; Serge Gambarelli; Mohamed Atta
Journal:  J Biol Chem       Date:  2012-10-05       Impact factor: 5.157

6.  Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales.

Authors:  J A McCloskey; D E Graham; S Zhou; P F Crain; M Ibba; J Konisky; D Söll; G J Olsen
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

7.  Decay time distribution analysis of Yt-base in benzene-methanol mixtures.

Authors:  I Gryczynski; W Wiczk; J R Lakowicz; M L Johnson
Journal:  J Photochem Photobiol B       Date:  1989-11       Impact factor: 6.252

8.  Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.

Authors:  Valérie de Crécy-Lagard; Céline Brochier-Armanet; Jaunius Urbonavicius; Bernard Fernandez; Gabriela Phillips; Benjamin Lyons; Akiko Noma; Sophie Alvarez; Louis Droogmans; Jean Armengaud; Henri Grosjean
Journal:  Mol Biol Evol       Date:  2010-04-09       Impact factor: 16.240

9.  Kinetics and mechanism of the acid-catalyzed hydrolysis of a hypermodified nucleoside wyosine and its 5'-monophosphate.

Authors:  B Golankiewicz; E Zielonacka-Lis; W Folkman
Journal:  Nucleic Acids Res       Date:  1985-04-11       Impact factor: 16.971

10.  Photochemical properties of Yt base in aqueous solution.

Authors:  S Paszyc; M Rafalska
Journal:  Nucleic Acids Res       Date:  1979-01       Impact factor: 16.971

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