Literature DB >> 9399880

O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins.

J E Hansen1, O Lund, J Nilsson, K Rapacki, S Brunak.   

Abstract

O-GLYCBASE is a revised database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the sequence databases. Entries include information about species, sequence, glycosylation sites and glycan type and is fully cross-referenced. Compared to version 2.0 the number of entries has increased by 20%. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu. dk/databases/OGLYCBASE/

Entities:  

Mesh：

Substances：

Year:  1998        PMID： 9399880      PMCID： PMC147183          DOI： 10.1093/nar/26.1.387

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  32 in total

1.  Discovery of the shortest sequence motif for high level mucin-type O-glycosylation.

Authors:  A Yoshida; M Suzuki; H Ikenaga; M Takeuchi
Journal:  J Biol Chem       Date:  1997-07-04       Impact factor: 5.157

2.  Sequence logos: a new way to display consensus sequences.

Authors:  T D Schneider; R M Stephens
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

3.  A vector projection method for predicting the specificity of GalNAc-transferase.

Authors:  K C Chou; C T Zhang; F J Kézdy; R A Poorman
Journal:  Proteins       Date:  1995-02

Review 4.  Towards characterizing O-glycans: the relative merits of in vivo and in vitro approaches in seeking peptide motifs specifying O-glycosylation sites.

Authors:  A A Gooley; K L Williams
Journal:  Glycobiology       Date:  1994-08       Impact factor: 4.313

5.  The SWISS-PROT protein sequence data bank: current status.

Authors:  A Bairoch; B Boeckmann
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

6.  Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase.

Authors:  J E Hansen; O Lund; J Engelbrecht; H Bohr; J O Nielsen; J E Hansen
Journal:  Biochem J       Date:  1995-06-15       Impact factor: 3.857

7.  Identification of a disaccharide (Xyl-Glc) and a trisaccharide (Xyl2-Glc) O-glycosidically linked to a serine residue in the first epidermal growth factor-like domain of human factors VII and IX and protein Z and bovine protein Z.

Authors:  H Nishimura; S Kawabata; W Kisiel; S Hase; T Ikenaka; T Takao; Y Shimonishi; S Iwanaga
Journal:  J Biol Chem       Date:  1989-12-05       Impact factor: 5.157

Review 8.  O-linked protein glycosylation structure and function.

Authors:  E F Hounsell; M J Davies; D V Renouf
Journal:  Glycoconj J       Date:  1996-02       Impact factor: 2.916

9.  Glycosylation sites identified by solid-phase Edman degradation: O-linked glycosylation motifs on human glycophorin A.

Authors:  A Pisano; J W Redmond; K L Williams; A A Gooley
Journal:  Glycobiology       Date:  1993-10       Impact factor: 4.313

10.  O-linked L-fucose is present in Desmodus rotundus salivary plasminogen activator.

Authors:  M Gohlke; G Baude; R Nuck; D Grunow; C Kannicht; P Bringmann; P Donner; W Reutter
Journal:  J Biol Chem       Date:  1996-03-29       Impact factor: 5.157
View more
  2 in total

1.  Database analysis of O-glycosylation sites in proteins.

Authors:  T H Thanka Christlet; K Veluraja
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Structural analysis and tissue localization of human C4.4A: a protein homologue of the urokinase receptor.

Authors:  Line V Hansen; Henrik Gårdsvoll; Boye S Nielsen; Leif R Lund; Keld Danø; Ole N Jensen; Michael Ploug
Journal:  Biochem J       Date:  2004-06-15       Impact factor: 3.857
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.