Literature DB >> 9399873

PLACE: a database of plant cis-acting regulatory DNA elements.

K Higo1, Y Ugawa, M Iwamoto, H Higo.   

Abstract

PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is a database of motifs found in plant cis -acting regulatory DNA elements, all from previously published reports. It covers vascular plants only. In addition to the motifs originally reported, their variations in other genes or in other plant species reported later are also compiled. The PLACE database also contains a brief description of each motif and relevant literature with PubMed ID numbers. This report summarizes the present status of this database and available tools.

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Year:  1998        PMID: 9399873      PMCID: PMC147199          DOI: 10.1093/nar/26.1.358

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptional elements.

Authors:  D S Prestridge
Journal:  Comput Appl Biosci       Date:  1991-04

Review 2.  New developments of a transcription factors database.

Authors:  D Ghosh
Journal:  Trends Biochem Sci       Date:  1991-11       Impact factor: 13.807

Review 3.  A relational database of transcription factors.

Authors:  D Ghosh
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

Review 4.  Molecular light switches for plant genes.

Authors:  P M Gilmartin; L Sarokin; J Memelink; N H Chua
Journal:  Plant Cell       Date:  1990-05       Impact factor: 11.277

5.  TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

Authors:  E Wingender; A E Kel; O V Kel; H Karas; T Heinemeyer; P Dietze; R Knüppel; A G Romaschenko; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

Review 6.  Gene expression during plant embryogenesis and germination: an overview.

Authors:  T L Thomas
Journal:  Plant Cell       Date:  1993-10       Impact factor: 11.277

7.  TRANSFAC: a database on transcription factors and their DNA binding sites.

Authors:  E Wingender; P Dietze; H Karas; R Knüppel
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

8.  Status of the transcription factors database (TFD).

Authors:  D Ghosh
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

  8 in total
  114 in total

1.  The arabidopsis cell plate-associated dynamin-like protein, ADL1Ap, is required for multiple stages of plant growth and development.

Authors:  B H Kang; J S Busse; C Dickey; D M Rancour; S Y Bednarek
Journal:  Plant Physiol       Date:  2001-05       Impact factor: 8.340

2.  Cloning and characterization of a maize SnRK2 protein kinase gene confers enhanced salt tolerance in transgenic Arabidopsis.

Authors:  Sheng Ying; Deng-Feng Zhang; Hui-Yong Li; Ying-Hui Liu; Yun-Su Shi; Yan-Chun Song; Tian-Yu Wang; Yu Li
Journal:  Plant Cell Rep       Date:  2011-06-03       Impact factor: 4.570

3.  Isolation and characterization of a novel seed-specific promoter from peanut (Arachis hypogaea L.).

Authors:  Cuiling Yuan; Chunjuan Li; Caixia Yan; Xiaobo Zhao; Juan Wang; Quanxi Sun; Shihua Shan
Journal:  Mol Biol Rep       Date:  2019-04-01       Impact factor: 2.316

4.  Characterization of an anther- and tapetum-specific gene and its highly specific promoter isolated from tomato.

Authors:  R D Chen; E Zimmermann; S X Xu; G S Liu; A G Smith
Journal:  Plant Cell Rep       Date:  2006-02-21       Impact factor: 4.570

Review 5.  A systems biology perspective on the role of WRKY transcription factors in drought responses in plants.

Authors:  Prateek Tripathi; Roel C Rabara; Paul J Rushton
Journal:  Planta       Date:  2013-10-22       Impact factor: 4.116

6.  Comparative transcriptome analysis in different tissues of a medicinal herb, Picrorhiza kurroa pinpoints transcription factors regulating picrosides biosynthesis.

Authors:  Ira Vashisht; Tarun Pal; Hemant Sood; Rajinder S Chauhan
Journal:  Mol Biol Rep       Date:  2016-09-15       Impact factor: 2.316

7.  Characterization and identification of cis-regulatory elements in Arabidopsis based on single-nucleotide polymorphism information.

Authors:  Paula Korkuc; Jos H M Schippers; Dirk Walther
Journal:  Plant Physiol       Date:  2013-11-07       Impact factor: 8.340

8.  Transcriptional profiling of Zea mays roots reveals roles for jasmonic acid and terpenoids in resistance against Phytophthora cinnamomi.

Authors:  Jane Alisa Allardyce; James Edward Rookes; Hashmath Inayath Hussain; David Miles Cahill
Journal:  Funct Integr Genomics       Date:  2013-02-22       Impact factor: 3.410

9.  Parameter discovery in stochastic biological models using simulated annealing and statistical model checking.

Authors:  Faraz Hussain; Sumit K Jha; Susmit Jha; Christopher J Langmead
Journal:  Int J Bioinform Res Appl       Date:  2014

10.  In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control.

Authors:  Angelica Lindlöf; Marcus Bräutigam; Aakash Chawade; Olof Olsson; Björn Olsson
Journal:  Bioinformatics       Date:  2009-03-25       Impact factor: 6.937

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