Literature DB >> 2186365

A relational database of transcription factors.

D Ghosh1.   

Abstract

Recent advances in the understanding of eukaryotic gene regulation have produced an extensive body of transcriptionally-related sequence information in the biological literature, and have created a need for computing structures that organize and manage this information. The 'relational model' represents an approach that is finding increasing application in the design of biological databases. This report describes the compilation of information regarding eukaryotic transcription factors, the organization of this information into five tables, the computational applications of the resultant relational database that are of theoretical as well as experimental interest, and possible avenues of further development.

Mesh:

Substances:

Year:  1990        PMID: 2186365      PMCID: PMC330592          DOI: 10.1093/nar/18.7.1749

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  66 in total

Review 1.  Promoter specificity and modulation of RNA polymerase II transcription.

Authors:  A G Saltzman; R Weinmann
Journal:  FASEB J       Date:  1989-04       Impact factor: 5.191

2.  Identification of factors that interact with the E1A-inducible adenovirus E3 promoter.

Authors:  H C Hurst; N C Jones
Journal:  Genes Dev       Date:  1987-12       Impact factor: 11.361

3.  A relational database of protein structures designed for flexible enquiries about conformation.

Authors:  S A Islam; M J Sternberg
Journal:  Protein Eng       Date:  1989-03

4.  Analysis of the relationship between side-chain conformation and secondary structure in globular proteins.

Authors:  M J McGregor; S A Islam; M J Sternberg
Journal:  J Mol Biol       Date:  1987-11-20       Impact factor: 5.469

5.  Three amino acids of the oestrogen receptor are essential to its ability to distinguish an oestrogen from a glucocorticoid-responsive element.

Authors:  S Mader; V Kumar; H de Verneuil; P Chambon
Journal:  Nature       Date:  1989-03-16       Impact factor: 49.962

Review 6.  Zinc fingers: gilt by association.

Authors:  R M Evans; S M Hollenberg
Journal:  Cell       Date:  1988-01-15       Impact factor: 41.582

7.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

8.  A relational database system for the maintenance and verification of the Los Alamos sequence library.

Authors:  M Kanehisa; J W Fickett; W B Goad
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

9.  Leucine repeats and an adjacent DNA binding domain mediate the formation of functional cFos-cJun heterodimers.

Authors:  R Turner; R Tjian
Journal:  Science       Date:  1989-03-31       Impact factor: 47.728

10.  Chicken liver TGGCA protein purified by preparative mobility shift electrophoresis (PMSE) shows a 36.8 to 29.8 kd microheterogeneity.

Authors:  R A Rupp; A E Sippel
Journal:  Nucleic Acids Res       Date:  1987-12-10       Impact factor: 16.971

View more
  49 in total

1.  Object-oriented transcription factors database (ooTFD).

Authors:  D Ghosh
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Identification of a transcriptional enhancer important for enteroendocrine and pancreatic islet cell-specific expression of the secretin gene.

Authors:  M B Wheeler; J Nishitani; A M Buchan; A S Kopin; W Y Chey; T M Chang; A B Leiter
Journal:  Mol Cell Biol       Date:  1992-08       Impact factor: 4.272

3.  Characterization of the human immunoglobulin kappa gene 3' enhancer: functional importance of three motifs that demonstrate B-cell-specific in vivo footprints.

Authors:  J G Judde; E E Max
Journal:  Mol Cell Biol       Date:  1992-11       Impact factor: 4.272

4.  Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

Authors:  Anil G Jegga; Shawn P Sherwood; James W Carman; Andrew T Pinski; Jerry L Phillips; John P Pestian; Bruce J Aronow
Journal:  Genome Res       Date:  2002-09       Impact factor: 9.043

5.  The EMBL data library.

Authors:  P J Stoehr; G N Cameron
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

6.  Evolution of transcriptional enhancers in the immunoglobulin heavy-chain gene: functional characteristics of the zebrafish Emu3' enhancer.

Authors:  Kristofor K Ellestad; Brad G Magor
Journal:  Immunogenetics       Date:  2005-03-09       Impact factor: 2.846

7.  The EMBL Data Library.

Authors:  D G Higgins; R Fuchs; P J Stoehr; G N Cameron
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

8.  TFD: the transcription factors database.

Authors:  D Ghosh
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

9.  WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences.

Authors:  G Pesole; N Prunella; S Liuni; M Attimonelli; C Saccone
Journal:  Nucleic Acids Res       Date:  1992-06-11       Impact factor: 16.971

10.  Delineation of the cis-acting element mediating EBNA-2 transactivation of latent infection membrane protein expression.

Authors:  S F Tsang; F Wang; K M Izumi; E Kieff
Journal:  J Virol       Date:  1991-12       Impact factor: 5.103

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.