Literature DB >> 9399872

The Eukaryotic Promoter Database EPD.

R Cavin Périer1, T Junier, P Bucher.   

Abstract

The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of experimentally characterised eukaryotic POL II promoters. The underlying definition of a promoter is that of a transcription initiation site. All information presented in EPD results from an independent evaluation of primary experimental data shown in the biological literature. Sequences flanking transcription initiation sites are indirectly given by pointers to EMBL sequences. The annotation part of a promoter entry includes description of the promoter-defining evidence, cross-references to other databases, and bibliographic references. Being designed as a resource for comparative sequence analysis, EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets. The database is available through the World Wide Web at URL http://cmpteam4.unil.ch

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Year:  1998        PMID: 9399872      PMCID: PMC147208          DOI: 10.1093/nar/26.1.353

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

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Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

Review 5.  Eukaryotic promoter recognition.

Authors:  J W Fickett; A G Hatzigeorgiou
Journal:  Genome Res       Date:  1997-09       Impact factor: 9.043

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Authors:  P Bucher; E N Trifonov
Journal:  Nucleic Acids Res       Date:  1986-12-22       Impact factor: 16.971

7.  The status of online Mendelian inheritance in man (OMIM) medio 1994.

Authors:  P Pearson; C Francomano; P Foster; C Bocchini; P Li; V McKusick
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Authors:  D A Benson; M Boguski; D J Lipman; J Ostell
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Authors:  P Bucher; B Bryan
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

Review 10.  Organization and expression of eucaryotic split genes coding for proteins.

Authors:  R Breathnach; P Chambon
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  10 in total
  47 in total

1.  The eukaryotic promoter database (EPD).

Authors:  R C Périer; V Praz; T Junier; C Bonnard; P Bucher
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Authors:  I Ioshikhes; E N Trifonov; M Q Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

3.  The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.

Authors:  Viviane Praz; Rouaïda Périer; Claude Bonnard; Philipp Bucher
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling.

Authors:  Rongxiang Liu; David J States
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

5.  The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.

Authors:  Christoph D Schmid; Viviane Praz; Mauro Delorenzi; Rouaïda Périer; Philipp Bucher
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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Journal:  J Mol Med (Berl)       Date:  2012-07-06       Impact factor: 4.599

7.  Core promoter elements of eukaryotic genes have a highly distinctive mechanical property.

Authors:  Yoshiro Fukue; Noriyuki Sumida; Jun-ichi Nishikawa; Takashi Ohyama
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8.  Identifying tissue-selective transcription factor binding sites in vertebrate promoters.

Authors:  Andrew D Smith; Pavel Sumazin; Michael Q Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-24       Impact factor: 11.205

Review 9.  Databases, models, and algorithms for functional genomics: a bioinformatics perspective.

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10.  Systems biology of embryogenesis.

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