Literature DB >> 20003850

Systems biology of embryogenesis.

Lucas B Edelman1, Sriram Chandrasekaran, Nathan D Price.   

Abstract

The development of a complete organism from a single cell involves extraordinarily complex orchestration of biological processes that vary intricately across space and time. Systems biology seeks to describe how all elements of a biological system interact in order to understand, model and ultimately predict aspects of emergent biological processes. Embryogenesis represents an extraordinary opportunity (and challenge) for the application of systems biology. Systems approaches have already been used successfully to study various aspects of development, from complex intracellular networks to four-dimensional models of organogenesis. Going forward, great advancements and discoveries can be expected from systems approaches applied to embryogenesis and developmental biology.

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Year:  2010        PMID: 20003850      PMCID: PMC2921326          DOI: 10.1071/RD09215

Source DB:  PubMed          Journal:  Reprod Fertil Dev        ISSN: 1031-3613            Impact factor:   2.311


  94 in total

1.  Systems biology and new technologies enable predictive and preventative medicine.

Authors:  Leroy Hood; James R Heath; Michael E Phelps; Biaoyang Lin
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

2.  MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision.

Authors:  Robert J Johnston; Sarah Chang; John F Etchberger; Christopher O Ortiz; Oliver Hobert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-12       Impact factor: 11.205

Review 3.  Canalization of development by microRNAs.

Authors:  Eran Hornstein; Noam Shomron
Journal:  Nat Genet       Date:  2006-06       Impact factor: 38.330

Review 4.  Biology by numbers: mathematical modelling in developmental biology.

Authors:  Claire J Tomlin; Jeffrey D Axelrod
Journal:  Nat Rev Genet       Date:  2007-05       Impact factor: 53.242

Review 5.  The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems.

Authors:  Dawn C Walker; Jennifer Southgate
Journal:  Brief Bioinform       Date:  2009-03-17       Impact factor: 11.622

6.  Canalization of segmentation and its evolution in Drosophila.

Authors:  Susan E Lott; Martin Kreitman; Arnar Palsson; Elena Alekseeva; Michael Z Ludwig
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-14       Impact factor: 11.205

7.  A mammalian microRNA expression atlas based on small RNA library sequencing.

Authors:  Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklos Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

Review 8.  The role of proteomics in defining the human embryonic secretome.

Authors:  M G Katz-Jaffe; S McReynolds; D K Gardner; W B Schoolcraft
Journal:  Mol Hum Reprod       Date:  2009-02-17       Impact factor: 4.025

9.  Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses.

Authors:  Long Li; Qianqian Zhu; Xin He; Saurabh Sinha; Marc S Halfon
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  Global analysis of patterns of gene expression during Drosophila embryogenesis.

Authors:  Pavel Tomancak; Benjamin P Berman; Amy Beaton; Richard Weiszmann; Elaine Kwan; Volker Hartenstein; Susan E Celniker; Gerald M Rubin
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  4 in total

1.  A model of stem cell population dynamics: in silico analysis and in vivo validation.

Authors:  Yaki Setty; Diana Dalfó; Dorota Z Korta; E Jane Albert Hubbard; Hillel Kugler
Journal:  Development       Date:  2012-01       Impact factor: 6.868

2.  How neurons migrate: a dynamic in-silico model of neuronal migration in the developing cortex.

Authors:  Yaki Setty; Chih-Chun Chen; Maria Secrier; Nikita Skoblov; Dimitrios Kalamatianos; Stephen Emmott
Journal:  BMC Syst Biol       Date:  2011-09-30

Review 3.  In-silico models of stem cell and developmental systems.

Authors:  Yaki Setty
Journal:  Theor Biol Med Model       Date:  2014-01-08       Impact factor: 2.432

4.  Integrative Temporo-Spatial, Mineralogic, Spectroscopic, and Proteomic Analysis of Postnatal Enamel Development in Teeth with Limited Growth.

Authors:  Mirali Pandya; Hui Liu; Smit J Dangaria; Weiying Zhu; Leo L Li; Shuang Pan; Moufida Abufarwa; Roderick G Davis; Stephen Guggenheim; Timothy Keiderling; Xianghong Luan; Thomas G H Diekwisch
Journal:  Front Physiol       Date:  2017-10-24       Impact factor: 4.566

  4 in total

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