Literature DB >> 9399853

Expanded versions of the 16S and 23S ribosomal RNA mutation databases (16SMDBexp and 23SMDBexp)

K L Triman1, A Peister, R A Goel.   

Abstract

Expanded versions of the Ribosomal RNA Mutation Databases provide lists of mutated positions in 16S and 16S-like ribosomal RNA (16SMDBexp) and 23S and 23S-like ribosomal RNA (23SMDBexp) and the identity of each alteration. Alterations from organisms other than Escherichia coli are reported at positions according to the E.coli numbering system. Information provided for each mutation includes: (i) a brief description of the phenotype(s) associated with each mutation, (ii) whether a mutant phenotype has been detected by in vivo or in vitro methods, and (iii) relevant literature citations. The databases are available via ftp and on the World Wide Web at the following URL: http: //www.fandm.edu/Departments/Biology/Databases/RNA.h tml

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Year:  1998        PMID: 9399853      PMCID: PMC147214          DOI: 10.1093/nar/26.1.280

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  The central pseudoknot in 16S ribosomal RNA is needed for ribosome stability but is not essential for 30S initiation complex formation.

Authors:  R A Poot; C W Pleij; J van Duin
Journal:  Nucleic Acids Res       Date:  1996-10-01       Impact factor: 16.971

2.  Introducing mutations into a chromosomal rRNA gene using a genetically modified eubacterial host with a single rRNA operon.

Authors:  P Sander; T Prammananan; E C Böttger
Journal:  Mol Microbiol       Date:  1996-12       Impact factor: 3.501

3.  Functional effects of mutating the closing GxA base-pair of a conserved hairpin loop in 23 S ribosomal RNA.

Authors:  W Xu; E J Murgola
Journal:  J Mol Biol       Date:  1996-12-06       Impact factor: 5.469

4.  Mutations at nucleotides G2251 and U2585 of 23 S rRNA perturb the peptidyl transferase center of the ribosome.

Authors:  R Green; R R Samaha; H F Noller
Journal:  J Mol Biol       Date:  1997-02-14       Impact factor: 5.469

5.  Acetylation of ribosomal protein S5 affected by defects in the central pseudoknot in 16S ribosomal RNA?

Authors:  R A Poot; R E Jeeninga; C W Pleij; J van Duin
Journal:  FEBS Lett       Date:  1997-01-20       Impact factor: 4.124

6.  Expansion of the 16S and 23S ribosomal RNA mutation databases (16SMDB and 23SMDB).

Authors:  K L Triman; B J Adams
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

7.  The donor substrate site within the peptidyl transferase loop of 23 S rRNA and its putative interactions with the CCA-end of N-blocked aminoacyl-tRNA(Phe).

Authors:  B T Porse; H P Thi-Ngoc; R A Garrett
Journal:  J Mol Biol       Date:  1996-12-06       Impact factor: 5.469

8.  The RNA binding site of S8 ribosomal protein of Escherichia coli: Selex and hydroxyl radical probing studies.

Authors:  H Moine; C Cachia; E Westhof; B Ehresmann; C Ehresmann
Journal:  RNA       Date:  1997-03       Impact factor: 4.942

9.  Conserved nucleotides of 23 S rRNA located at the ribosomal peptidyltransferase center.

Authors:  C M Spahn; M A Schäfer; A A Krayevsky; K H Nierhaus
Journal:  J Biol Chem       Date:  1996-12-20       Impact factor: 5.157

10.  Mutations in 23S rRNA are associated with clarithromycin resistance in Helicobacter pylori.

Authors:  J Versalovic; D Shortridge; K Kibler; M V Griffy; J Beyer; R K Flamm; S K Tanaka; D Y Graham; M F Go
Journal:  Antimicrob Agents Chemother       Date:  1996-02       Impact factor: 5.191

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  8 in total

1.  A mutation in the decoding center of Thermus thermophilus 16S rRNA suggests a novel mechanism of streptomycin resistance.

Authors:  Steven T Gregory; Jennifer F Carr; Albert E Dahlberg
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

2.  Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit.

Authors:  Susan J Schroeder; Gregor Blaha; Peter B Moore
Journal:  Antimicrob Agents Chemother       Date:  2007-07-30       Impact factor: 5.191

3.  Mutational analysis of 16S and 23S rRNA genes of Thermus thermophilus.

Authors:  Steven T Gregory; Jennifer F Carr; Daniel Rodriguez-Correa; Albert E Dahlberg
Journal:  J Bacteriol       Date:  2005-07       Impact factor: 3.490

4.  Assembly constraints drive co-evolution among ribosomal constituents.

Authors:  Saurav Mallik; Hiroshi Akashi; Sudip Kundu
Journal:  Nucleic Acids Res       Date:  2015-05-08       Impact factor: 16.971

5.  Controlling orthogonal ribosome subunit interactions enables evolution of new function.

Authors:  Wolfgang H Schmied; Zakir Tnimov; Chayasith Uttamapinant; Christopher D Rae; Stephen D Fried; Jason W Chin
Journal:  Nature       Date:  2018-12-05       Impact factor: 49.962

6.  Expression of the human immunodeficiency virus frameshift signal in a bacterial cell-free system: influence of an interaction between the ribosome and a stem-loop structure downstream from the slippery site.

Authors:  M N Brunelle; C Payant; G Lemay; L Brakier-Gingras
Journal:  Nucleic Acids Res       Date:  1999-12-15       Impact factor: 16.971

7.  Revealing unique properties of the ribosome using a network based analysis.

Authors:  Hilda David-Eden; Yael Mandel-Gutfreund
Journal:  Nucleic Acids Res       Date:  2008-07-14       Impact factor: 16.971

8.  De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data.

Authors:  Ekaterina Avershina; Trine Frisli; Knut Rudi
Journal:  Microbes Environ       Date:  2013-04-20       Impact factor: 2.912

  8 in total

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