Literature DB >> 9399804

SGD: Saccharomyces Genome Database.

J M Cherry1, C Adler, C Ball, S A Chervitz, S S Dwight, E T Hester, Y Jia, G Juvik, T Roe, M Schroeder, S Weng, D Botstein.   

Abstract

The Saccharomyces Genome Database (SGD) provides Internet access to the complete Saccharomyces cerevisiae genomic sequence, its genes and their products, the phenotypes of its mutants, and the literature supporting these data. The amount of information and the number of features provided by SGD have increased greatly following the release of the S.cerevisiae genomic sequence, which is currently the only complete sequence of a eukaryotic genome. SGD aids researchers by providing not only basic information, but also tools such as sequence similarity searching that lead to detailed information about features of the genome and relationships between genes. SGD presents information using a variety of user-friendly, dynamically created graphical displays illustrating physical, genetic and sequence feature maps. SGD can be accessed via the World Wide Web at http://genome-www.stanford.edu/Saccharomyces/

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Year:  1998        PMID: 9399804      PMCID: PMC147204          DOI: 10.1093/nar/26.1.73

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  28 in total

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Journal:  Yeast       Date:  1992-10       Impact factor: 3.239

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Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  The PIR-International Protein Sequence Database.

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Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 5.  Cn3D: a new generation of three-dimensional molecular structure viewer.

Authors:  C W Hogue
Journal:  Trends Biochem Sci       Date:  1997-08       Impact factor: 13.807

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Authors:  R K Mortimer; D Schild; C R Contopoulou; J A Kans
Journal:  Yeast       Date:  1989 Sep-Oct       Impact factor: 3.239

7.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

8.  Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII.

Authors:  M Johnston; S Andrews; R Brinkman; J Cooper; H Ding; J Dover; Z Du; A Favello; L Fulton; S Gattung
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

9.  Enhanced graphic matrix analysis of nucleic acid and protein sequences.

Authors:  J V Maizel; R P Lenk
Journal:  Proc Natl Acad Sci U S A       Date:  1981-12       Impact factor: 11.205

10.  The Yeast Protein Database (YPD): a curated proteome database for Saccharomyces cerevisiae.

Authors:  P E Hodges; W E Payne; J I Garrels
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

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  381 in total

1.  Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.

Authors:  Soumya Raychaudhuri; Jeffrey T Chang; Patrick D Sutphin; Russ B Altman
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

2.  SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Authors:  P Bertone; Y Kluger; N Lan; D Zheng; D Christendat; A Yee; A M Edwards; C H Arrowsmith; G T Montelione; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

3.  GeneLynx: a gene-centric portal to the human genome.

Authors:  B Lenhard; W S Hayes; W W Wasserman
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

4.  The human genome browser at UCSC.

Authors:  W James Kent; Charles W Sugnet; Terrence S Furey; Krishna M Roskin; Tom H Pringle; Alan M Zahler; David Haussler
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

5.  Assessing experimentally derived interactions in a small world.

Authors:  Debra S Goldberg; Frederick P Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

6.  A literature-based method for assessing the functional coherence of a gene group.

Authors:  Soumya Raychaudhuri; Russ B Altman
Journal:  Bioinformatics       Date:  2003-02-12       Impact factor: 6.937

7.  yMGV: a database for visualization and data mining of published genome-wide yeast expression data.

Authors:  P Marc; F Devaux; C Jacq
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

8.  Predicting protein functions from redundancies in large-scale protein interaction networks.

Authors:  Manoj Pratim Samanta; Shoudan Liang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-17       Impact factor: 11.205

9.  A complex-based reconstruction of the Saccharomyces cerevisiae interactome.

Authors:  Haidong Wang; Boyko Kakaradov; Sean R Collins; Lena Karotki; Dorothea Fiedler; Michael Shales; Kevan M Shokat; Tobias C Walther; Nevan J Krogan; Daphne Koller
Journal:  Mol Cell Proteomics       Date:  2009-01-27       Impact factor: 5.911

10.  Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts.

Authors:  David Sherman; Pascal Durrens; Emmanuelle Beyne; Macha Nikolski; Jean-Luc Souciet
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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