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Literature DB >> 9399800

RegulonDB: a database on transcriptional regulation in Escherichia coli.

A M Huerta¹, H Salgado, D Thieffry, J Collado-Vides.

Abstract

RegulonDB is a DataBase that integrates biological knowledge of the mechanisms that regulate the transcription initiation in Escherichia coli , as well as knowledge on the organization of the genes and regulatory signals into operons in the chromosome. The operon is the basic structure used in RegulonDB to describe the elements and properties of transcriptional regulation. The current version contains information around some 500 regulation mechanisms, essentially for sigma 70 promoters.

Entities: Species

Mesh：

Year: 1998 PMID： 9399800 PMCID： PMC147189 DOI： 10.1093/nar/26.1.55

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

7 in total

1. Genetic regulatory mechanisms in the synthesis of proteins.

Authors: F JACOB; J MONOD
Journal: J Mol Biol Date: 1961-06 Impact factor: 5.469

Review 2. Control site location and transcriptional regulation in Escherichia coli.

Authors: J Collado-Vides; B Magasanik; J D Gralla
Journal: Microbiol Rev Date: 1991-09

3. The complete genome sequence of Escherichia coli K-12.

Authors: F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal: Science Date: 1997-09-05 Impact factor: 47.728

4. Compilation of E. coli mRNA promoter sequences.

Authors: S Lisser; H Margalit
Journal: Nucleic Acids Res Date: 1993-04-11 Impact factor: 16.971

5. TRANSFAC: a database on transcription factors and their DNA binding sites.

Authors: E Wingender; P Dietze; H Karas; R Knüppel
Journal: Nucleic Acids Res Date: 1996-01-01 Impact factor: 16.971

6. METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database.

Authors: T Rouxel; A Danchin; A Henaut
Journal: Comput Appl Biosci Date: 1993-06

7. EcoCyc: an encyclopedia of Escherichia coli genes and metabolism.

Authors: P D Karp; M Riley; S M Paley; A Pelligrini-Toole
Journal: Nucleic Acids Res Date: 1996-01-01 Impact factor: 16.971

7 in total

76 in total

1. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.

Authors: H Salgado; A Santos-Zavaleta; S Gama-Castro; D Millán-Zárate; E Díaz-Peredo; F Sánchez-Solano; E Pérez-Rueda; C Bonavides-Martínez; J Collado-Vides
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

2. Transcription in archaea.

Authors: N C Kyrpides; C A Ouzounis
Journal: Proc Natl Acad Sci U S A Date: 1999-07-20 Impact factor: 11.205

3. Prediction of operons in microbial genomes.

Authors: M D Ermolaeva; O White; S L Salzberg
Journal: Nucleic Acids Res Date: 2001-03-01 Impact factor: 16.971

4. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.

Authors: Heladia Salgado; Socorro Gama-Castro; Agustino Martínez-Antonio; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Martín Peralta-Gil; Delfino Garcia-Alonso; Verónica Jiménez-Jacinto; Alberto Santos-Zavaleta; César Bonavides-Martínez; Julio Collado-Vides
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

RegulonDB: a database on transcriptional regulation in Escherichia coli.

1. Genetic regulatory mechanisms in the synthesis of proteins.

Review 2. Control site location and transcriptional regulation in Escherichia coli.

3. The complete genome sequence of Escherichia coli K-12.

4. Compilation of E. coli mRNA promoter sequences.

5. TRANSFAC: a database on transcription factors and their DNA binding sites.

6. METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database.

7. EcoCyc: an encyclopedia of Escherichia coli genes and metabolism.

1. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.

2. Transcription in archaea.

3. Prediction of operons in microbial genomes.

4. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.

5. Computational identification of operons in microbial genomes.

Review 6. Phylogenetic footprinting: a boost for microbial regulatory genomics.

7. Semi-supervised prediction of gene regulatory networks using machine learning algorithms.

8. RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.

9. Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes.

10. Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli.