Literature DB >> 8479900

Compilation of E. coli mRNA promoter sequences.

S Lisser1, H Margalit.   

Abstract

An updated compilation of 300 E. coli mRNA promoter sequences is presented. For each sequence the most recent relevant paper was checked, to verify the location of the transcriptional start position as identified experimentally. We comment on the reliability of the sequence databanks and analyze the conservation of known promoter features in the current compilation. This database is available by E-mail.

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Year:  1993        PMID： 8479900      PMCID： PMC309355          DOI： 10.1093/nar/21.7.1507

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  209 in total

1.  Analysis of the regulatory region of the Escherichia coli nupG gene, encoding a nucleoside-transport protein.

Authors:  A Munch-Petersen; N Jensen
Journal:  Eur J Biochem       Date:  1990-07-05

2.  Identification and sequence of the drpA gene from Escherichia coli.

Authors:  Z Zhou; M Syvanen
Journal:  J Bacteriol       Date:  1990-01       Impact factor: 3.490

3.  Transcriptional regulation of the cytochrome b562-o complex in Escherichia coli. Gene expression and molecular characterization of the promoter.

Authors:  J Minagawa; H Nakamura; I Yamato; T Mogi; Y Anraku
Journal:  J Biol Chem       Date:  1990-07-05       Impact factor: 5.157

Review 4.  Regulatory sequences involved in the promotion and termination of RNA transcription.

Authors:  M Rosenberg; D Court
Journal:  Annu Rev Genet       Date:  1979       Impact factor: 16.830

5.  Basis for changes in DNA recognition by the EcoR124 and EcoR124/3 type I DNA restriction and modification enzymes.

Authors:  C Price; J Lingner; T A Bickle; K Firman; S W Glover
Journal:  J Mol Biol       Date:  1989-01-05       Impact factor: 5.469

6.  Promoter analysis of the phosphoenolpyruvate carboxylase gene of Escherichia coli.

Authors:  K Izui; T Miwa; M Kajitani; N Fujita; H Sabe; A Ishihama; H Katsuki
Journal:  Nucleic Acids Res       Date:  1985-01-11       Impact factor: 16.971

7.  Transcription of the uvrD gene of Escherichia coli is controlled by the lexA repressor and by attenuation.

Authors:  A M Easton; S R Kushner
Journal:  Nucleic Acids Res       Date:  1983-12-20       Impact factor: 16.971

8.  Osmotic induction of the periplasmic trehalase in Escherichia coli K12: characterization of the treA gene promoter.

Authors:  F Repoila; C Gutierrez
Journal:  Mol Microbiol       Date:  1991-03       Impact factor: 3.501

9.  Structure and regulation of aroH, the structural gene for the tryptophan-repressible 3-deoxy-D-arabino-heptulosonic acid-7-phosphate synthetase of Escherichia coli.

Authors:  G Zurawski; R P Gunsalus; K D Brown; C Yanofsky
Journal:  J Mol Biol       Date:  1981-01-05       Impact factor: 5.469

10.  Nucleotide sequence of the pyrD gene of Escherichia coli and characterization of the flavoprotein dihydroorotate dehydrogenase.

Authors:  J N Larsen; K F Jensen
Journal:  Eur J Biochem       Date:  1985-08-15
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  146 in total

1.  Function-based selection and characterization of base-pair polymorphisms in a promoter of Escherichia coli RNA polymerase-sigma(70).

Authors:  J Xu; B C McCabe; G B Koudelka
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

2.  Analysis of BvgA activation of the pertactin gene promoter in Bordetella pertussis.

Authors:  S M Kinnear; P E Boucher; S Stibitz; N H Carbonetti
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

3.  The choline-converting pathway in Staphylococcus xylosus C2A: genetic and physiological characterization.

Authors:  R Rosenstein; D Futter-Bryniok; F Götz
Journal:  J Bacteriol       Date:  1999-04       Impact factor: 3.490

4.  Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation.

Authors:  T D Schneider
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

5.  Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerization.

Authors:  M S Fenton; J D Gralla
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

6.  Diversity of Tn4001 transposition products: the flanking IS256 elements can form tandem dimers and IS circles.

Authors:  M Prudhomme; C Turlan; J-P Claverys; M Chandler
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

7.  Transcriptional regulation of fis operon involves a module of multiple coupled promoters.

Authors:  William Nasser; Mark Rochman; Georgi Muskhelishvili
Journal:  EMBO J       Date:  2002-02-15       Impact factor: 11.598

8.  Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins.

Authors:  M T Marr; S A Datwyler; C F Meares; J W Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

9.  The FokI methyltransferase from Flavobacterium okeanokoites. Purification and characterization of the enzyme and its truncated derivatives.

Authors:  T Kaczorowski; M Sektas; P Skowron; A J Podhajska
Journal:  Mol Biotechnol       Date:  1999-11       Impact factor: 2.695

10.  Effect of late promoter activity on bacteriophage lambda fitness.

Authors:  Yongping Shao; Ing-Nang Wang
Journal:  Genetics       Date:  2009-01-26       Impact factor: 4.562
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