Literature DB >> 9380711

The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence.

J F Theis1, C S Newlon.   

Abstract

Autonomously replicating sequence (ARS) elements, which function as the cis-acting chromosomal replicators in the yeast Saccharomyces cerevisiae, depend upon an essential copy of the 11-bp ARS consensus sequence (ACS) for activity. Analysis of the chromosome III replicator ARS309 unexpectedly revealed that its essential ACS differs from the canonical ACS at two positions. One of the changes observed in ARS309 inactivates other ARS elements. This atypical ACS binds the origin recognition complex efficiently and is required for chromosomal replication origin activity. Comparison of the essential ACS of ARS309 with the essential regions of other ARS elements revealed an expanded 17-bp conserved sequence that efficiently predicts the essential core of ARS elements.

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Year:  1997        PMID： 9380711      PMCID： PMC23486          DOI： 10.1073/pnas.94.20.10786

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  44 in total

1.  Multiple determinants controlling activation of yeast replication origins late in S phase.

Authors:  K L Friedman; J D Diller; B M Ferguson; S V Nyland; B J Brewer; W L Fangman
Journal:  Genes Dev       Date:  1996-07-01       Impact factor: 11.361

2.  Isolation and characterisation of a yeast chromosomal replicator.

Authors:  D T Stinchcomb; K Struhl; R W Davis
Journal:  Nature       Date:  1979-11-01       Impact factor: 49.962

3.  The origin recognition complex has essential functions in transcriptional silencing and chromosomal replication.

Authors:  C A Fox; S Loo; A Dillin; J Rine
Journal:  Genes Dev       Date:  1995-04-15       Impact factor: 11.361

4.  Multiple DNA elements in ARS305 determine replication origin activity in a yeast chromosome.

Authors:  R Y Huang; D Kowalski
Journal:  Nucleic Acids Res       Date:  1996-03-01       Impact factor: 16.971

5.  Cytosine specific DNA sequencing with hydrogen peroxide.

Authors:  P Richterich; N D Lakey; H M Lee; J I Mao; D Smith; G M Church
Journal:  Nucleic Acids Res       Date:  1995-12-11       Impact factor: 16.971

6.  Localization and sequence analysis of yeast origins of DNA replication.

Authors:  J R Broach; Y Y Li; J Feldman; M Jayaram; J Abraham; K A Nasmyth; J B Hicks
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

7.  Structural requirements for the function of a yeast chromosomal replicator.

Authors:  S Kearsey
Journal:  Cell       Date:  1984-05       Impact factor: 41.582

8.  Yeast DNA replication in vitro: initiation and elongation events mimic in vivo processes.

Authors:  S E Celniker; J L Campbell
Journal:  Cell       Date:  1982-11       Impact factor: 41.582

9.  The origin recognition complex in silencing, cell cycle progression, and DNA replication.

Authors:  S Loo; C A Fox; J Rine; R Kobayashi; B Stillman; S Bell
Journal:  Mol Biol Cell       Date:  1995-06       Impact factor: 4.138

10.  High-frequency transformation of yeast by plasmids containing the cloned yeast ARG4 gene.

Authors:  C L Hsiao; J Carbon
Journal:  Proc Natl Acad Sci U S A       Date:  1979-08       Impact factor: 11.205
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  56 in total

1.  Isolation of replicational cue elements from a library of bent DNAs of Aspergillus oryzae.

Authors:  T Kusakabe; Y Sugimoto; Y Hirota; S Toné; Y Kawaguchi; K Koga; T Ohyama
Journal:  Mol Biol Rep       Date:  2000-03       Impact factor: 2.316

2.  A genetic system for direct selection of gene-positive clones during recombinational cloning in yeast.

Authors:  Vladimir Noskov; Natalay Kouprina; Sun-Hee Leem; Maxim Koriabine; J Carl Barrett; Vladimir Larionov
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

3.  The efficiency of different IRESs (internal ribosomes entry site) in monocistronic mRNAS.

Authors:  J Attal; M C Théron; S Rival; C Puissant; L M Houdebine
Journal:  Mol Biol Rep       Date:  2000-03       Impact factor: 2.316

4.  Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe.

Authors:  Mónica Segurado; Alberto de Luis; Francisco Antequera
Journal:  EMBO Rep       Date:  2003-10-17       Impact factor: 8.807

5.  Genome-wide identification and characterization of replication origins by deep sequencing.

Authors:  Jia Xu; Yoshimi Yanagisawa; Alexander M Tsankov; Christopher Hart; Keita Aoki; Naveen Kommajosyula; Kathleen E Steinmann; James Bochicchio; Carsten Russ; Aviv Regev; Oliver J Rando; Chad Nusbaum; Hironori Niki; Patrice Milos; Zhiping Weng; Nicholas Rhind
Journal:  Genome Biol       Date:  2012-04-24       Impact factor: 13.583

6.  Stochastic hybrid modeling of DNA replication across a complete genome.

Authors:  J Lygeros; K Koutroumpas; S Dimopoulos; I Legouras; P Kouretas; C Heichinger; P Nurse; Z Lygerou
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-19       Impact factor: 11.205

7.  Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches.

Authors:  Aloys Schepers; Peer Papior
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

Review 8.  Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control.

Authors:  Elizabeth Suzanne Dorn; Jeanette Gowen Cook
Journal:  Epigenetics       Date:  2011-05-01       Impact factor: 4.528

9.  Molecular analysis of the replication program in unicellular model organisms.

Authors:  M K Raghuraman; Bonita J Brewer
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

10.  Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data.

Authors:  Huaien Luo; Juntao Li; Majid Eshaghi; Jianhua Liu; R Krishna Murthy Karuturi
Journal:  BMC Bioinformatics       Date:  2010-05-13       Impact factor: 3.169
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