Literature DB >> 21364325

Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control.

Elizabeth Suzanne Dorn1, Jeanette Gowen Cook.   

Abstract

The importance of local chromatin structure in regulating replication initiation has become increasingly apparent. Most recently, histone methylation and nucleosome positioning have been added to the list of modifications demonstrated to regulate origins. In particular, the methylation states of H3K4, H3K36 and H4K20 have been associated with establishing active, repressed or poised origins depending on the timing and extent of methylation. The stability and precise positioning of nucleosomes has also been demonstrated to affect replication efficiency. Although it is not yet clear how these modifications alter the behavior of specific replication factors, ample evidence establishes their role in maintaining coordinated replication. This review will summarize recent advances in understanding these aspects of chromatin structure in DNA replication origin control.

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Year:  2011        PMID: 21364325      PMCID: PMC3230546          DOI: 10.4161/epi.6.5.15082

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  85 in total

1.  Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms.

Authors:  V Q Nguyen; C Co; J J Li
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

Review 2.  DNA replication in eukaryotic cells.

Authors:  Stephen P Bell; Anindya Dutta
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

3.  Evidence for sequential action of cdc7 and cdk2 protein kinases during initiation of DNA replication in Xenopus egg extracts.

Authors:  J C Walter
Journal:  J Biol Chem       Date:  2000-12-15       Impact factor: 5.157

Review 4.  Replication timing and transcriptional control: beyond cause and effect.

Authors:  David M Gilbert
Journal:  Curr Opin Cell Biol       Date:  2002-06       Impact factor: 8.382

5.  Chromatin signatures of the Drosophila replication program.

Authors:  Matthew L Eaton; Joseph A Prinz; Heather K MacAlpine; George Tretyakov; Peter V Kharchenko; David M MacAlpine
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

Review 6.  Histone acetylation and transcriptional regulatory mechanisms.

Authors:  K Struhl
Journal:  Genes Dev       Date:  1998-03-01       Impact factor: 11.361

7.  Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Authors:  Sushmita Roy; Jason Ernst; Peter V Kharchenko; Pouya Kheradpour; Nicolas Negre; Matthew L Eaton; Jane M Landolin; Christopher A Bristow; Lijia Ma; Michael F Lin; Stefan Washietl; Bradley I Arshinoff; Ferhat Ay; Patrick E Meyer; Nicolas Robine; Nicole L Washington; Luisa Di Stefano; Eugene Berezikov; Christopher D Brown; Rogerio Candeias; Joseph W Carlson; Adrian Carr; Irwin Jungreis; Daniel Marbach; Rachel Sealfon; Michael Y Tolstorukov; Sebastian Will; Artyom A Alekseyenko; Carlo Artieri; Benjamin W Booth; Angela N Brooks; Qi Dai; Carrie A Davis; Michael O Duff; Xin Feng; Andrey A Gorchakov; Tingting Gu; Jorja G Henikoff; Philipp Kapranov; Renhua Li; Heather K MacAlpine; John Malone; Aki Minoda; Jared Nordman; Katsutomo Okamura; Marc Perry; Sara K Powell; Nicole C Riddle; Akiko Sakai; Anastasia Samsonova; Jeremy E Sandler; Yuri B Schwartz; Noa Sher; Rebecca Spokony; David Sturgill; Marijke van Baren; Kenneth H Wan; Li Yang; Charles Yu; Elise Feingold; Peter Good; Mark Guyer; Rebecca Lowdon; Kami Ahmad; Justen Andrews; Bonnie Berger; Steven E Brenner; Michael R Brent; Lucy Cherbas; Sarah C R Elgin; Thomas R Gingeras; Robert Grossman; Roger A Hoskins; Thomas C Kaufman; William Kent; Mitzi I Kuroda; Terry Orr-Weaver; Norbert Perrimon; Vincenzo Pirrotta; James W Posakony; Bing Ren; Steven Russell; Peter Cherbas; Brenton R Graveley; Suzanna Lewis; Gos Micklem; Brian Oliver; Peter J Park; Susan E Celniker; Steven Henikoff; Gary H Karpen; Eric C Lai; David M MacAlpine; Lincoln D Stein; Kevin P White; Manolis Kellis
Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

8.  Conserved antagonism between JMJD2A/KDM4A and HP1γ during cell cycle progression.

Authors:  Joshua C Black; Andrew Allen; Capucine Van Rechem; Emily Forbes; Michelle Longworth; Katrin Tschöp; Claire Rinehart; Jonathan Quiton; Ryan Walsh; Andrea Smallwood; Nicholas J Dyson; Johnathan R Whetstine
Journal:  Mol Cell       Date:  2010-12-10       Impact factor: 17.970

9.  Oncogenic potential of the DNA replication licensing protein CDT1.

Authors:  Elizabeth Arentson; Patrick Faloon; Junghee Seo; Eunpyo Moon; Joey M Studts; Daved H Fremont; Kyunghee Choi
Journal:  Oncogene       Date:  2002-02-14       Impact factor: 9.867

10.  Nucleosomes positioned by ORC facilitate the initiation of DNA replication.

Authors:  J R Lipford; S P Bell
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

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  28 in total

1.  DNA hypomethylation induces a DNA replication-associated cell cycle arrest to block hepatic outgrowth in uhrf1 mutant zebrafish embryos.

Authors:  Vinitha Jacob; Yelena Chernyavskaya; Xintong Chen; Poh Seng Tan; Brandon Kent; Yujin Hoshida; Kirsten C Sadler
Journal:  Development       Date:  2015-01-06       Impact factor: 6.868

2.  Cell cycle-dependent degradation of the methyltransferase SETD3 attenuates cell proliferation and liver tumorigenesis.

Authors:  Xiaoqing Cheng; Yuan Hao; Wenjie Shu; Mengjie Zhao; Chen Zhao; Yuan Wu; Xiaodan Peng; Pinfang Yao; Daibiao Xiao; Guoliang Qing; Zhengying Pan; Lei Yin; Desheng Hu; Hai-Ning Du
Journal:  J Biol Chem       Date:  2017-04-25       Impact factor: 5.157

3.  Differential chromatin structure encompassing replication origins in transformed and normal cells.

Authors:  Domenic Di Paola; Emmanouil Rampakakis; Man Kid Chan; Maria Zannis-Hadjopoulos
Journal:  Genes Cancer       Date:  2012-02

4.  Dynamic regulation of histone H3K9 is linked to the switch between replication and transcription at the Dbf4 origin-promoter locus.

Authors:  Kathleen Kylie; Julia Romero; Indeewari K S Lindamulage; James Knockleby; Hoyun Lee
Journal:  Cell Cycle       Date:  2016-06-24       Impact factor: 4.534

Review 5.  DNA replication origins.

Authors:  Alan C Leonard; Marcel Méchali
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-10-01       Impact factor: 10.005

Review 6.  Significance of epigenetic landscape in cartilage regeneration from the cartilage development and pathology perspective.

Authors:  Jingting Li; James Ohliger; Ming Pei
Journal:  Stem Cells Dev       Date:  2014-04-01       Impact factor: 3.272

7.  The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States.

Authors:  Joana Sequeira-Mendes; Irene Aragüez; Ramón Peiró; Raul Mendez-Giraldez; Xiaoyu Zhang; Steven E Jacobsen; Ugo Bastolla; Crisanto Gutierrez
Journal:  Plant Cell       Date:  2014-06-16       Impact factor: 11.277

Review 8.  Genome Duplication: The Heartbeat of Developing Organisms.

Authors:  Melvin L DePamphilis
Journal:  Curr Top Dev Biol       Date:  2016-01-20       Impact factor: 4.897

9.  Hira-mediated H3.3 incorporation is required for DNA replication and ribosomal RNA transcription in the mouse zygote.

Authors:  Chih-Jen Lin; Fong Ming Koh; Priscilla Wong; Marco Conti; Miguel Ramalho-Santos
Journal:  Dev Cell       Date:  2014-07-31       Impact factor: 12.270

Review 10.  Genome maintenance in the context of 4D chromatin condensation.

Authors:  Sonia Yu; Fan Yang; Wen H Shen
Journal:  Cell Mol Life Sci       Date:  2016-04-20       Impact factor: 9.261

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