Literature DB >> 9376374

The lubricant of life: a proposal that solvent water promotes extremely fast conformational fluctuations in mobile heteropolypeptide structure.

L D Barron1, L Hecht, G Wilson.   

Abstract

Recent observations using the novel technique of Raman optical activity suggest that individual residues in unfolded proteins and in disordered loop regions of molten globule-like states cluster in the alpha-helix, beta-structure, and PPII-helix regions of the Ramachandran surface and that they "flicker" between these regions at rates approximately 10(12) s-1 at room temperature. It is proposed that these rapid motions, which occur on the same picosecond time scale as rearrangements of the hydrogen bond network in bulk water, are promoted by solvent water molecules via a repertoire of transient hydrated reverse turn conformations. Some implications of this proposal for protein folding and function are discussed.

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Year:  1997        PMID: 9376374     DOI: 10.1021/bi971323j

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

Review 1.  Mass spectrometry of proteins of known mass.

Authors:  A D Miranker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  The topomer-sampling model of protein folding.

Authors:  D A Debe; M J Carlson; W A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

3.  The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments.

Authors:  M Tarek; D J Tobias
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

4.  Electron transfer kinetics in photosynthetic reaction centers embedded in trehalose glasses: trapping of conformational substates at room temperature.

Authors:  Gerardo Palazzo; Antonia Mallardi; Alejandro Hochkoeppler; Lorenzo Cordone; Giovanni Venturoli
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

5.  Nativelike enzyme properties are important for optimum activity in neat organic solvents.

Authors:  K Griebenow; M Vidal; C Baéz; A M Santos; G Barletta
Journal:  J Am Chem Soc       Date:  2001-06-06       Impact factor: 15.419

6.  Peptide-plane flipping in proteins.

Authors:  S Hayward
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

7.  A simple model for polyproline II structure in unfolded states of alanine-based peptides.

Authors:  Rohit V Pappu; George D Rose
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

8.  Residual water modulates QA- -to-QB electron transfer in bacterial reaction centers embedded in trehalose amorphous matrices.

Authors:  Francesco Francia; Gerardo Palazzo; Antonia Mallardi; Lorenzo Cordone; Giovanni Venturoli
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

Review 9.  Helical membrane protein conformations and their environment.

Authors:  Timothy A Cross; Dylan T Murray; Anthony Watts
Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

10.  Structure and dynamics of the solvation of bovine pancreatic trypsin inhibitor in explicit water: a comparative study of the effects of solvent and protein polarizability.

Authors:  Byungchan Kim; Tom Young; Edward Harder; Richard A Friesner; B J Berne
Journal:  J Phys Chem B       Date:  2005-09-01       Impact factor: 2.991

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