Literature DB >> 9307038

A 13C-NMR study of the role of Asn-155 in stabilizing the oxyanion of a subtilisin tetrahedral adduct.

T P O'connell1, R M Day, E V Torchilin, W W Bachovchin, J G Malthouse.   

Abstract

By removing one of the hydrogen-bond donors in the oxyanion hole of subtilisin BPN, we have been able to determine how it affects the catalytic efficiency of the enzyme and the pKa of the oxyanion formed in a choloromethane inhibitor derivative. Variant 8397 of subtilisin BPN contains five mutations which enhance its stability. Site-directed mutagenesis was used to prepare the N155A mutant of this variant. The catalytic efficiencies of wild-type and variant 8397 are similar, but replacing Asn-155 with alanine reduces catalytic efficiency approx. 300-fold. All three forms of subtilisin were alkylated using benzyloxycarbonylglycylglycyl[2-13C]phenylalanylchloromethane++ + and examined by 13C-NMR. A single signal due to the 13C-enriched carbon was detected in all the derivatives and it was assigned to the hemiketal carbon of a tetrahedral adduct formed between the hydroxy group of Ser-221 and the inhibitor. This signal had chemical shifts in the range 98.3-103.6 p.p.m., depending on the pH. The titration shift of 4.7-4.8 p.p.m. was assigned to oxyanion formation. The oxyanion pKa values in the wild-type and 8397 variants were 6.92 and 7.00 respectively. In the N155A mutant of the 8397 variant the oxyanion pKa increased to 8.09. We explain why such a small increase is observed and we conclude that it is the interaction between the oxyanion and the imidazolium cation of the active-site histidine that is the main factor responsible for lowering the oxyanion pKa.

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Year:  1997        PMID: 9307038      PMCID: PMC1218743          DOI: 10.1042/bj3260861

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  39 in total

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Journal:  J Biol Chem       Date:  1965-03       Impact factor: 5.157

Review 2.  Serine proteases: structure and mechanism of catalysis.

Authors:  J Kraut
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

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Authors:  J D Robertus; J Kraut; R A Alden; J J Birktoft
Journal:  Biochemistry       Date:  1972-11-07       Impact factor: 3.162

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Authors:  K Morihara; T Oka
Journal:  Arch Biochem Biophys       Date:  1970-06       Impact factor: 4.013

5.  Structure of crystalline alpha-chymotrypsin. IV. The structure of indoleacryloyl-alpha-chyotrypsin and its relevance to the hydrolytic mechanism of the enzyme.

Authors:  R Henderson
Journal:  J Mol Biol       Date:  1970-12-14       Impact factor: 5.469

6.  Energetics of enzyme catalysis.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

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Authors:  E Shaw; S Springhorn
Journal:  Biochem Biophys Res Commun       Date:  1967-05-05       Impact factor: 3.575

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Authors:  T L Poulos; R A Alden; S T Freer; J J Birktoft; J Kraut
Journal:  J Biol Chem       Date:  1976-02-25       Impact factor: 5.157

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Authors:  J C Powers; M O Lively; J T Tippett
Journal:  Biochim Biophys Acta       Date:  1977-01-11

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Authors:  J R Coggins; W Kray; E Shaw
Journal:  Biochem J       Date:  1974-03       Impact factor: 3.857

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  4 in total

1.  13C-NMR study of the inhibition of delta-chymotrypsin by a tripeptide-glyoxal inhibitor.

Authors:  Aleksandra Djurdjevic-Pahl; Chandralal Hewage; J Paul G Malthouse
Journal:  Biochem J       Date:  2002-03-01       Impact factor: 3.857

2.  Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN' by NMR.

Authors:  Regina M Day; Craig J Thalhauser; James L Sudmeier; Matthew P Vincent; Ekaterina V Torchilin; David G Sanford; Christopher W Bachovchin; William W Bachovchin
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

3.  A new lysine derived glyoxal inhibitor of trypsin, its properties and utilization for studying the stabilization of tetrahedral adducts by trypsin.

Authors:  Jennifer A Cleary; J Paul G Malthouse
Journal:  Biochem Biophys Rep       Date:  2016-01-04

4.  Quantifying tetrahedral adduct formation and stabilization in the cysteine and the serine proteases.

Authors:  Jennifer A Cleary; William Doherty; Paul Evans; J Paul G Malthouse
Journal:  Biochim Biophys Acta       Date:  2015-07-11
  4 in total

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