Literature DB >> 12202385

Cooperativity and specificity of association of a designed transmembrane peptide.

Holly Gratkowski1, Qing-Hong Dai, A Joshua Wand, William F DeGrado, James D Lear.   

Abstract

Thermodynamics studies aimed at quantitatively characterizing free energy effects of amino acid substitutions are not restricted to two state systems, but do require knowing the number of states involved in the equilibrium under consideration. Using analytical ultracentrifugation and NMR methods, we show here that a membrane-soluble peptide, MS1, designed by modifying the sequence of the water-soluble coiled-coil GCN4-P1, exhibits a reversible monomer-dimer-trimer association in detergent micelles with a greater degree of cooperativity in C14-betaine than in dodecyl phosphocholine detergents.

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Year:  2002        PMID: 12202385      PMCID: PMC1302258          DOI: 10.1016/S0006-3495(02)73930-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  33 in total

1.  Polar side chains drive the association of model transmembrane peptides.

Authors:  H Gratkowski; J D Lear; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Detergents modulate dimerization, but not helicity, of the glycophorin A transmembrane domain.

Authors:  L E Fisher; D M Engelman; J N Sturgis
Journal:  J Mol Biol       Date:  1999-10-29       Impact factor: 5.469

3.  pH-dependent tetramerization and amantadine binding of the transmembrane helix of M2 from the influenza A virus.

Authors:  D Salom; B R Hill; J D Lear; W F DeGrado
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

Review 4.  De novo design, synthesis and characterization of membrane-active peptides.

Authors:  J D Lear; H Gratkowski; W F DeGrado
Journal:  Biochem Soc Trans       Date:  2001-08       Impact factor: 5.407

5.  Asparagine-mediated self-association of a model transmembrane helix.

Authors:  C Choma; H Gratkowski; J D Lear; W F DeGrado
Journal:  Nat Struct Biol       Date:  2000-02

6.  Interhelical hydrogen bonding drives strong interactions in membrane proteins.

Authors:  F X Zhou; M J Cocco; W P Russ; A T Brunger; D M Engelman
Journal:  Nat Struct Biol       Date:  2000-02

7.  A quantitative model for allosteric control of purine reduction by murine ribonucleotide reductase.

Authors:  C P Scott; O B Kashlan; J D Lear; B S Cooperman
Journal:  Biochemistry       Date:  2001-02-13       Impact factor: 3.162

8.  Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: additivity scheme and implication of protein unfolding at normal and high pressure.

Authors:  D P Kharakoz
Journal:  Biochemistry       Date:  1997-08-19       Impact factor: 3.162

9.  Thermodynamics of the alpha-helix-coil transition of amphipathic peptides in a membrane environment: implications for the peptide-membrane binding equilibrium.

Authors:  T Wieprecht; O Apostolov; M Beyermann; J Seelig
Journal:  J Mol Biol       Date:  1999-12-03       Impact factor: 5.469

10.  Inactivation mechanism of the membrane protein diacylglycerol kinase in detergent solution.

Authors:  Y Zhou; F W Lau; S Nauli; D Yang; J U Bowie
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

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  10 in total

Review 1.  How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.

Authors:  William F DeGrado; Holly Gratkowski; James D Lear
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

2.  Quantification of helix-helix binding affinities in micelles and lipid bilayers.

Authors:  Andrei L Lomize; I D Pogozheva; H I Mosberg
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

Review 3.  Structure elucidation of dimeric transmembrane domains of bitopic proteins.

Authors:  Eduard V Bocharov; Pavel E Volynsky; Konstantin V Pavlov; Roman G Efremov; Alexander S Arseniev
Journal:  Cell Adh Migr       Date:  2010-05-01       Impact factor: 3.405

4.  Rotational orientation of monomers within a designed homo-oligomer transmembrane helical bundle.

Authors:  Kathleen P Howard; Wei Liu; Evan Crocker; Vikas Nanda; James Lear; William F Degrado; Steven O Smith
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

5.  Association of transmembrane helices: what determines assembling of a dimer?

Authors:  Roman G Efremov; Yana A Vereshaga; Pavel E Volynsky; Dmitry E Nolde; Alexander S Arseniev
Journal:  J Comput Aided Mol Des       Date:  2006-05-19       Impact factor: 3.686

6.  The membrane- and soluble-protein helix-helix interactome: similar geometry via different interactions.

Authors:  Shao-Qing Zhang; Daniel W Kulp; Chaim A Schramm; Marco Mravic; Ilan Samish; William F DeGrado
Journal:  Structure       Date:  2015-02-19       Impact factor: 5.006

7.  Direct simulation of transmembrane helix association: role of asparagines.

Authors:  Thomas Stockner; Walter L Ash; Justin L MacCallum; D Peter Tieleman
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

8.  Polar residues in transmembrane helices can decrease electrophoretic mobility in polyacrylamide gels without causing helix dimerization.

Authors:  William F Walkenhorst; Mikhail Merzlyakov; Kalina Hristova; William C Wimley
Journal:  Biochim Biophys Acta       Date:  2009-03-02

9.  Biochemical and molecular dynamic simulation analysis of a weak coiled coil association between kinesin-II stalks.

Authors:  Harinath Doodhi; Swadhin C Jana; Pavithra Devan; Shyamalava Mazumdar; Krishanu Ray
Journal:  PLoS One       Date:  2012-09-28       Impact factor: 3.240

Review 10.  Association energetics of membrane spanning alpha-helices.

Authors:  Kevin R MacKenzie; Karen G Fleming
Journal:  Curr Opin Struct Biol       Date:  2008-06-05       Impact factor: 6.809

  10 in total

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