Literature DB >> 9245440

Manual manufacturing of oligonucleotide, DNA, and protein microchips.

D Guschin1, G Yershov, A Zaslavsky, A Gemmell, V Shick, D Proudnikov, P Arenkov, A Mirzabekov.   

Abstract

A simple procedure for manufacturing microchips containing various gel-immobilized compounds is described. A gel photopolymerization technique is introduced to produce micromatrices of polyacrylamide gel pads (25 x 25 x 20 microm and larger) separated by a hydrophobic glass surface. A pin device for the manual application of a compound in solution onto the activated polyacrylamide gel pad for immobilization is described. Oligonucleotide, DNA, and protein microchips have been produced by this method and tested by hybridization and immunoanalysis monitored with a fluorescence microscope. The effect of the lengths of the immobilized oligonucleotides and the hybridized RNA and DNA on hybridization of the oligonucleotide microchips was evaluated. This method can also be used for manufacturing microchips containing a variety of other compounds.

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Year:  1997        PMID: 9245440     DOI: 10.1006/abio.1997.2209

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  30 in total

Review 1.  Mutational analysis using oligonucleotide microarrays.

Authors:  J G Hacia; F S Collins
Journal:  J Med Genet       Date:  1999-10       Impact factor: 6.318

2.  Use of immobilized PCR primers to generate covalently immobilized DNAs for in vitro transcription/translation reactions.

Authors:  J D Andreadis; L A Chrisey
Journal:  Nucleic Acids Res       Date:  2000-01-15       Impact factor: 16.971

3.  Advanced method for oligonucleotide deprotection.

Authors:  S A Surzhikov; E N Timofeev; B K Chernov; J B Golova; A D Mirzabekov
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

4.  Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses.

Authors:  Hidetoshi Urakawa; Peter A Noble; Said El Fantroussi; John J Kelly; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

5.  Signal amplification by rolling circle amplification on DNA microarrays.

Authors:  G Nallur; C Luo; L Fang; S Cooley; V Dave; J Lambert; K Kukanskis; S Kingsmore; R Lasken; B Schweitzer
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

6.  Massive parallel analysis of the binding specificity of histone-like protein HU to single- and double-stranded DNA with generic oligodeoxyribonucleotide microchips.

Authors:  A S Krylov; O A Zasedateleva; D V Prokopenko; J Rouviere-Yaniv; A D Mirzabekov
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

7.  Label-free hybridization detection of a single nucleotide mismatch by immobilization of molecular beacons on an agarose film.

Authors:  Hong Wang; Jiong Li; Heping Liu; Quanjun Liu; Qian Mei; Yijin Wang; Jijun Zhu; Nongyue He; Zuhong Lu
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

8.  Microimmunoassay using a protein chip: optimizing conditions for protein immobilization.

Authors:  Seung-Yong Seong
Journal:  Clin Diagn Lab Immunol       Date:  2002-07

9.  Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays.

Authors:  Hidetoshi Urakawa; Said El Fantroussi; Hauke Smidt; James C Smoot; Erik H Tribou; John J Kelly; Peter A Noble; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

Review 10.  Microarray applications in microbial ecology research.

Authors:  T J Gentry; G S Wickham; C W Schadt; Z He; J Zhou
Journal:  Microb Ecol       Date:  2006-08-08       Impact factor: 4.552

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