Literature DB >> 11256813

A graphical method for the analysis of anisotropic rotational diffusion in proteins.

O Millet1, M Pons.   

Abstract

A graphical method for the analysis of relaxation data is presented. It allows a fast estimation of the range of values of the components of the axially symmetric rotational diffusion tensor that are compatible with the experimental relaxation data. The graphical method clearly shows the contribution of different experimental relaxation parameters to the measured anisotropy. In particular, for proteins with moderate anisotropy, data from at least two N-H bonds forming angles close to 0 degrees and 90 degrees with respect to the principal axis of the rotational diffusional tensor are needed. For very anisotropic systems, combination of different relaxation parameters from a single residue is enough to characterize the local anisotropy.

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Year:  2001        PMID: 11256813     DOI: 10.1023/a:1008327607259

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  11 in total

1.  Rotational diffusion anisotropy of proteins from simultaneous analysis of 15N and 13C alpha nuclear spin relaxation.

Authors:  L K Lee; M Rance; W J Chazin; A G Palmer
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

2.  Anisotropic molecular rotational diffusion in 15N spin relaxation studies of protein mobility.

Authors:  P Luginbühl; K V Pervushin; H Iwai; K Wüthrich
Journal:  Biochemistry       Date:  1997-06-17       Impact factor: 3.162

3.  Backbone dynamics of calcium-loaded calbindin D9k studied by two-dimensional proton-detected 15N NMR spectroscopy.

Authors:  J Kördel; N J Skelton; M Akke; A G Palmer; W J Chazin
Journal:  Biochemistry       Date:  1992-05-26       Impact factor: 3.162

4.  Propagation of experimental uncertainties using the Lipari-Szabo model-free analysis of protein dynamics.

Authors:  D Jin; M Andrec; G T Montelione; R M Levy
Journal:  J Biomol NMR       Date:  1998-11       Impact factor: 2.835

5.  Defining long range order in NMR structure determination from the dependence of heteronuclear relaxation times on rotational diffusion anisotropy.

Authors:  N Tjandra; D S Garrett; A M Gronenborn; A Bax; G M Clore
Journal:  Nat Struct Biol       Date:  1997-06

6.  Backbone and methyl dynamics of the regulatory domain of troponin C: anisotropic rotational diffusion and contribution of conformational entropy to calcium affinity.

Authors:  S M Gagné; S Tsuda; L Spyracopoulos; L E Kay; B D Sykes
Journal:  J Mol Biol       Date:  1998-05-08       Impact factor: 5.469

7.  Long-range motional restrictions in a multidomain zinc-finger protein from anisotropic tumbling.

Authors:  R Brüschweiler; X Liao; P E Wright
Journal:  Science       Date:  1995-05-12       Impact factor: 47.728

8.  Backbone dynamics of trp repressor studied by 15N NMR relaxation.

Authors:  Z Zheng; J Czaplicki; O Jardetzky
Journal:  Biochemistry       Date:  1995-04-18       Impact factor: 3.162

9.  Backbone dynamics of a model membrane protein: 13C NMR spectroscopy of alanine methyl groups in detergent-solubilized M13 coat protein.

Authors:  G D Henry; J H Weiner; B D Sykes
Journal:  Biochemistry       Date:  1986-02-11       Impact factor: 3.162

10.  Tryptophan sidechain dynamics in hydrophobic oligopeptides determined by use of 13C nuclear magnetic resonance spectroscopy.

Authors:  A J Weaver; M D Kemple; F G Prendergast
Journal:  Biophys J       Date:  1988-07       Impact factor: 4.033

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