Literature DB >> 11101213

Lipari-Szabo mapping: A graphical approach to Lipari-Szabo analysis of NMR relaxation data using reduced spectral density mapping.

M Andrec1, G T Montelione, R M Levy.   

Abstract

In this paper, we explore connections between the Lipari-Szabo formalism and reduced spectral density mapping, and show how spectral density estimates can be associated with Lipari-Szabo parameters via a simple geometric construction which we call Lipari-Szabo mapping. This relationship can be used to estimate Lipari-Szabo parameters from spectral density estimates without the need for nonlinear optimization, and to perform 'model selection' in a graphical manner. The Lipari-Szabo map also provides insight into the Lipari-Szabo model, and allows us to determine when a given set of experimental spectral densities are inconsistent with the Lipari-Szabo formalism. Practical applications of Lipari-Szabo mapping in conjunction with more traditional analysis methods are discussed.

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Year:  2000        PMID: 11101213     DOI: 10.1023/a:1008302101116

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

1.  Estimation of dynamic parameters from NMR relaxation data using the Lipari-Szabo model-free approach and Bayesian statistical methods.

Authors:  M Andrec; G T Montelione; R M Levy
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Rotational diffusion anisotropy of proteins from simultaneous analysis of 15N and 13C alpha nuclear spin relaxation.

Authors:  L K Lee; M Rance; W J Chazin; A G Palmer
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

3.  Propagation of experimental uncertainties using the Lipari-Szabo model-free analysis of protein dynamics.

Authors:  D Jin; M Andrec; G T Montelione; R M Levy
Journal:  J Biomol NMR       Date:  1998-11       Impact factor: 2.835

4.  Backbone dynamics of ribonuclease T1 and its complex with 2'GMP studied by two-dimensional heteronuclear NMR spectroscopy.

Authors:  D Fushman; R Weisemann; H Thüring; H Rüterjans
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

5.  Internal mobility in the partially folded DNA binding and dimerization domains of GAL4: NMR analysis of the N-H spectral density functions.

Authors:  J F Lefevre; K T Dayie; J W Peng; G Wagner
Journal:  Biochemistry       Date:  1996-02-27       Impact factor: 3.162

6.  A test of the model-free formulas. Effects of anisotropic rotational diffusion and dimerization.

Authors:  J M Schurr; H P Babcock; B S Fujimoto
Journal:  J Magn Reson B       Date:  1994-11

7.  Internal motion time scales of a small, highly stable and disulfide-rich protein: a 15N, 13C NMR and molecular dynamics study.

Authors:  M Guenneugues; B Gilquin; N Wolff; A Ménez; S Zinn-Justin
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

8.  Frequency spectrum of NH bonds in eglin c from spectral density mapping at multiple fields.

Authors:  J W Peng; G Wagner
Journal:  Biochemistry       Date:  1995-12-26       Impact factor: 3.162

9.  Spectral density function mapping using 15N relaxation data exclusively.

Authors:  N A Farrow; O Zhang; A Szabo; D A Torchia; L E Kay
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  Solution NMR structure and backbone dynamics of the major cold-shock protein (CspA) from Escherichia coli: evidence for conformational dynamics in the single-stranded RNA-binding site.

Authors:  W Feng; R Tejero; D E Zimmerman; M Inouye; G T Montelione
Journal:  Biochemistry       Date:  1998-08-04       Impact factor: 3.162

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  5 in total

1.  Model-free analysis of protein dynamics: assessment of accuracy and model selection protocols based on molecular dynamics simulation.

Authors:  Jianhan Chen; Charles L Brooks; Peter E Wright
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

2.  Backbone dynamics of the monomeric lambda repressor denatured state ensemble under nondenaturing conditions.

Authors:  Preeti Chugha; Terrence G Oas
Journal:  Biochemistry       Date:  2007-02-06       Impact factor: 3.162

3.  Continuous Interdomain Orientation Distributions Reveal Components of Binding Thermodynamics.

Authors:  Yang Qi; Jeffrey W Martin; Adam W Barb; François Thélot; Anthony K Yan; Bruce R Donald; Terrence G Oas
Journal:  J Mol Biol       Date:  2018-06-18       Impact factor: 5.469

4.  NMR relaxation and structural elucidation of peptides in the presence and absence of trifluoroethanol illuminates the critical molecular nature of integrin αvβ6 ligand specificity.

Authors:  Jane L Wagstaff; Michelle L Rowe; Shu-Ju Hsieh; Danielle DiCara; John F Marshall; Richard A Williamson; Mark J Howard
Journal:  RSC Adv       Date:  2012-09-17       Impact factor: 3.361

5.  Impact of the Hereditary P301L Mutation on the Correlated Conformational Dynamics of Human Tau Protein Revealed by the Paramagnetic Relaxation Enhancement NMR Experiments.

Authors:  Ryosuke Kawasaki; Shin-Ichi Tate
Journal:  Int J Mol Sci       Date:  2020-05-30       Impact factor: 5.923

  5 in total

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