Literature DB >> 9199768

Collective properties of hydration: long range and specificity of hydrophobic interactions.

V Martorana1, D Bulone, P L San Biagio, M B Palma-Vittorelli, M U Palma.   

Abstract

We report results of molecular dynamics (MD) simulations of composite model solutes in explicit molecular water solvent, eliciting novel aspects of the recently demonstrated, strong many-body character of hydration. Our solutes consist of identical apolar (hydrophobic) elements in fixed configurations. Results show that the many-body character of PMF is sufficiently strong to cause 1) a remarkable extension of the range of hydrophobic interactions between pairs of solute elements, up to distances large enough to rule out pairwise interactions of any type, and 2) a SIF that drives one of the hydrophobic solute elements toward the solvent rather than away from it. These findings complement recent data concerning SIFs on a protein at single-residue resolution and on model systems. They illustrate new important consequences of the collective character of hydration and of PMF and reveal new aspects of hydrophobic interactions and, in general, of SIFs. Their relevance to protein recognition, conformation, function, and folding and to the observed slight yet significant nonadditivity of functional effects of distant point mutations in proteins is discussed. These results point out the functional role of the configurational and dynamical states (and related statistical weights) corresponding to the complex configurational energy landscape of the two interacting systems: biomolecule + water.

Entities:  

Mesh:

Substances:

Year:  1997        PMID: 9199768      PMCID: PMC1180905          DOI: 10.1016/S0006-3495(97)78044-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

1.  Some factors in the interpretation of protein denaturation.

Authors:  W KAUZMANN
Journal:  Adv Protein Chem       Date:  1959

2.  Role of subunit interfaces in the allosteric mechanism of hemoglobin.

Authors:  C Chothia; S Wodak; J Janin
Journal:  Proc Natl Acad Sci U S A       Date:  1976-11       Impact factor: 11.205

3.  Hydrophobic hydration: Inhomogeneous water structure near nonpolar molecular solutes.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-05

4.  Solvent effects on protein association and protein folding.

Authors:  A Ben-Naim
Journal:  Biopolymers       Date:  1990-02-15       Impact factor: 2.505

Review 5.  Principles of protein folding--a perspective from simple exact models.

Authors:  K A Dill; S Bromberg; K Yue; K M Fiebig; D P Yee; P D Thomas; H S Chan
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

6.  The role of water in hemoglobin function and stability.

Authors:  D Bulone; P L San Biagio; M B Palma-Vittorelli; M U Palma
Journal:  Science       Date:  1993-02-26       Impact factor: 47.728

Review 7.  Enthalpic contribution to protein stability: insights from atom-based calculations and statistical mechanics.

Authors:  T Lazaridis; G Archontis; M Karplus
Journal:  Adv Protein Chem       Date:  1995

8.  Long-range, small magnitude nonadditivity of mutational effects in proteins.

Authors:  V J LiCata; G K Ackers
Journal:  Biochemistry       Date:  1995-03-14       Impact factor: 3.162

9.  Patterns of nonadditivity between pairs of stability mutations in staphylococcal nuclease.

Authors:  S M Green; D Shortle
Journal:  Biochemistry       Date:  1993-09-28       Impact factor: 3.162

10.  Self-assembly of bioelastomeric structures from solutions: mean-field critical behavior and Flory-Huggins free energy of interactions.

Authors:  F Sciortino; K U Prasad; D W Urry; M U Palma
Journal:  Biopolymers       Date:  1993-05       Impact factor: 2.505

View more
  5 in total

1.  Solvent-induced free energy landscape and solute-solvent dynamic coupling in a multielement solute.

Authors:  P L San Biagio; V Martorana; D Bulone; M B Palma-Vittorelli; M U Palma
Journal:  Biophys J       Date:  2008-11-21       Impact factor: 4.033

2.  Protein aggregation/crystallization and minor structural changes: universal versus specific aspects.

Authors:  F Pullara; A Emanuele; M B Palma-Vittorelli; M U Palma
Journal:  Biophys J       Date:  2007-07-27       Impact factor: 4.033

3.  The role of solvent in protein folding and in aggregation.

Authors:  S M Vaiana; M Manno; A Emanuele; M B Palma-Vittorelli; M U Palma
Journal:  J Biol Phys       Date:  2001-06       Impact factor: 1.365

4.  Parallelization and improvements of the generalized born model with a simple sWitching function for modern graphics processors.

Authors:  Evan J Arthur; Charles L Brooks
Journal:  J Comput Chem       Date:  2016-01-20       Impact factor: 3.376

5.  Biochemical and biophysical analysis of five disease-associated human adenylosuccinate lyase mutants.

Authors:  Lushanti De Zoysa Ariyananda; Peychii Lee; Christina Antonopoulos; Roberta F Colman
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.