| Literature DB >> 23345739 |
S M Vaiana1, M Manno, A Emanuele, M B Palma-Vittorelli, M U Palma.
Abstract
We discuss features of the effect of solvent on protein folding andaggregation, highlighting the physics related to the particulate nature and the peculiar structure of the aqueous solvent, and the biological significance of interactions between solvent and proteins. To this purpose we use a generalized energy landscape of extended dimensionality. A closer look at the properties of solvent induced interactions and forces proves useful for understanding the physical grounds of `ad hoc' interactions and for devising realistic ways of accounting for solvent effects. The solvent has long been known to be a crucially important part of biological systems, and times appear mature for it to be adequately accounted for in the protein folding problem. Use of the extended dimensionality energy landscape helpseliciting the possibility of coupling among conformational changes and aggregation, such as proved by experimental data in the literature.Keywords: Computational modeling; energy landscapes; hydration; hydrophobic interactions; protein aggregation; protein conformational changes; protein folding; protein-solvent interactions; spinodal and coexistence
Year: 2001 PMID: 23345739 PMCID: PMC3456586 DOI: 10.1023/A:1013146530021
Source DB: PubMed Journal: J Biol Phys ISSN: 0092-0606 Impact factor: 1.365