Literature DB >> 9192617

The rational design and construction of a cuboidal iron-sulfur protein.

C D Coldren1, H W Hellinga, J P Caradonna.   

Abstract

Rational protein design is an emerging approach for testing general theories of protein chemistry through the creation of new structures and functions. Here we present the first successful introduction by rational design of a [Fe4S4] cuboidal cluster into the hydrophobic core of Escherichia coli thioredoxin, a protein normally devoid of metal centers. Cuboidal [Fe4S4] is one of the stable forms of self-assembled iron-sulfur clusters that are thought to represent some of the earliest evolved biological redox centers. [Fe4S4] clusters have been recruited for use in a variety of proteins whose functions are central to many of the major biochemical processes ranging from simple soluble electron-transfer agents, to membrane-bound components of electron-transfer chains, to electron reservoirs in complex metalloenzymes such as nitrogenase. By situating an [Fe4S4] cluster into a protein environment not previously adapted by evolution we can explore the factors by which their activity is modulated by the protein matrix.

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Year:  1997        PMID: 9192617      PMCID: PMC21210          DOI: 10.1073/pnas.94.13.6635

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Sequence-specific recognition of DNA by zinc-finger peptides derived from the transcription factor Sp1.

Authors:  R W Kriwacki; S C Schultz; T A Steitz; J P Caradonna
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

Review 2.  Thioredoxin.

Authors:  A Holmgren
Journal:  Annu Rev Biochem       Date:  1985       Impact factor: 23.643

3.  Influence of charge and polarity on the redox potentials of high-potential iron-sulfur proteins: evidence for the existence of two groups.

Authors:  H A Heering; B M Bulsink; W R Hagen; T E Meyer
Journal:  Biochemistry       Date:  1995-11-14       Impact factor: 3.162

Review 4.  Catalytic antibodies: a critical assessment.

Authors:  D S Tawfik; Z Eshhar; B S Green
Journal:  Mol Biotechnol       Date:  1994-02       Impact factor: 2.695

Review 5.  Protein design: novel metal-binding sites.

Authors:  L Regan
Journal:  Trends Biochem Sci       Date:  1995-07       Impact factor: 13.807

6.  Redox reactions of the hydrogenase-cytochrome C3 system from Desulfovibrio gigas with the synthetic analogue of ferredoxin active site [Fe4S4 (S-CH2-CH2OH)4]2-.

Authors:  M R'zaigui; E C Hatchikian; D Benlian
Journal:  Biochem Biophys Res Commun       Date:  1980-02-27       Impact factor: 3.575

7.  Ferredoxin and ferredoxin-heme maquettes.

Authors:  B R Gibney; S E Mulholland; F Rabanal; P L Dutton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

8.  Linkage of thioredoxin stability to titration of ionizable groups with perturbed pKa.

Authors:  K Langsetmo; J A Fuchs; C Woodward; K A Sharp
Journal:  Biochemistry       Date:  1991-07-30       Impact factor: 3.162

9.  Letter: Theoretical model for the 4-Fe active sites in oxidized ferredoxin and reduced "high-potential" proteins. Electronic structure of the analogue [Fe4S4(SCH3)4]2-.

Authors:  C Y Yang; K H Johnson; R H Holm; J G Norman
Journal:  J Am Chem Soc       Date:  1975-10-29       Impact factor: 15.419

10.  Conformational and functional similarities between glutaredoxin and thioredoxins.

Authors:  H Eklund; C Cambillau; B M Sjöberg; A Holmgren; H Jörnvall; J O Höög; C I Brändén
Journal:  EMBO J       Date:  1984-07       Impact factor: 11.598

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  17 in total

1.  Rational design of nascent metalloenzymes.

Authors:  D E Benson; M S Wisz; H W Hellinga
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 2.  De novo design of helical bundles as models for understanding protein folding and function.

Authors:  R B Hill; D P Raleigh; A Lombardi; W F DeGrado
Journal:  Acc Chem Res       Date:  2000-11       Impact factor: 22.384

3.  Function and subnuclear distribution of Rpp21, a protein subunit of the human ribonucleoprotein ribonuclease P.

Authors:  N Jarrous; R Reiner; D Wesolowski; H Mann; C Guerrier-Takada; S Altman
Journal:  RNA       Date:  2001-08       Impact factor: 4.942

4.  Computational design of a Zn2+ receptor that controls bacterial gene expression.

Authors:  M A Dwyer; L L Looger; H W Hellinga
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-19       Impact factor: 11.205

5.  Motif-directed flexible backbone design of functional interactions.

Authors:  James J Havranek; David Baker
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

6.  Solution structure of HndAc: a thioredoxin-like domain involved in the NADP-reducing hydrogenase complex.

Authors:  Matthieu Nouailler; Xavier Morelli; Olivier Bornet; Bernard Chetrit; Zorah Dermoun; Françoise Guerlesquin
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

Review 7.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

8.  Natural selection based on coordination chemistry: computational assessment of [4Fe-4S]-maquettes with non-coded amino acids.

Authors:  Robert K Szilagyi; Rebecca Hanscam; Eric M Shepard; Shawn E McGlynn
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

9.  Radical S-adenosylmethionine maquette chemistry: Cx3Cx2C peptide coordinated redox active [4Fe-4S] clusters.

Authors:  Amanda Galambas; Jacquelyn Miller; Morgan Jones; Elizabeth McDaniel; Molly Lukes; Hope Watts; Valérie Copié; Joan B Broderick; Robert K Szilagyi; Eric M Shepard
Journal:  J Biol Inorg Chem       Date:  2019-09-05       Impact factor: 3.358

10.  Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins.

Authors:  A Lombardi; C M Summa; S Geremia; L Randaccio; V Pavone; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

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