Literature DB >> 11259306

Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

M C Williams1, J R Wenner, I Rouzina, V A Bloomfield.   

Abstract

When a single molecule of double-stranded DNA is stretched beyond its B-form contour length, the measured force shows a highly cooperative overstretching transition. We have measured the force at which this transition occurs as a function of temperature. To do this, single molecules of DNA were captured between two polystyrene beads in an optical tweezers apparatus. As the temperature of the solution surrounding a captured molecule was increased from 11 degrees C to 52 degrees C in 500 mM NaCl, the overstretching transition force decreased from 69 pN to 50 pN. This reduction is attributed to a decrease in the stability of the DNA double helix with increasing temperature. These results quantitatively agree with a model that asserts that DNA melting occurs during the overstretching transition. With this model, the data may be analyzed to obtain the change in the melting entropy DeltaS of DNA with temperature. The observed nonlinear temperature dependence of DeltaS is a result of the positive change in heat capacity of DNA upon melting, which we determine from our stretching measurements to be DeltaC(p) = 60 +/- 10 cal/mol K bp, in agreement with calorimetric measurements.

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Year:  2001        PMID: 11259306      PMCID: PMC1301382          DOI: 10.1016/S0006-3495(01)76163-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Stretching DNA with optical tweezers.

Authors:  M D Wang; H Yin; R Landick; J Gelles; S M Block
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

2.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

3.  DNA: an extensible molecule.

Authors:  P Cluzel; A Lebrun; C Heller; R Lavery; J L Viovy; D Chatenay; F Caron
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

4.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

5.  Modelling extreme stretching of DNA.

Authors:  A Lebrun; R Lavery
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

6.  Dynamic strength of molecular adhesion bonds.

Authors:  E Evans; K Ritchie
Journal:  Biophys J       Date:  1997-04       Impact factor: 4.033

7.  Predicting DNA duplex stability from the base sequence.

Authors:  K J Breslauer; R Frank; H Blöcker; L A Marky
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

8.  Enthalpy-entropy compensation in DNA melting thermodynamics.

Authors:  J Petruska; M F Goodman
Journal:  J Biol Chem       Date:  1995-01-13       Impact factor: 5.157

9.  Salt effects on the denaturation of DNA. IV. A calorimetric study of the helix-coil conversion of the alternating copolymer poly[d(A-T)].

Authors:  D W Gruenwedel
Journal:  Biochim Biophys Acta       Date:  1975-07-07

10.  Increasing incidence of childhood celiac disease in Sicily: results of a multicenter study.

Authors:  G Magazzú; G Bottaro; F Cataldo; G Iacono; F Di Donato; R Patane; F Cavataio; I Maltese; C Romano; A Arco
Journal:  Acta Paediatr       Date:  1994-10       Impact factor: 2.299

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  62 in total

1.  Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.

Authors:  M C Williams; I Rouzina; J R Wenner; R J Gorelick; K Musier-Forsyth; V A Bloomfield
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-08       Impact factor: 11.205

2.  Specific zinc-finger architecture required for HIV-1 nucleocapsid protein's nucleic acid chaperone function.

Authors:  Mark C Williams; Robert J Gorelick; Karin Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-25       Impact factor: 11.205

Review 3.  Mechanics and imaging of single DNA molecules.

Authors:  M Hegner; W Grange
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

4.  Pathway shifts and thermal softening in temperature-coupled forced unfolding of spectrin domains.

Authors:  Richard Law; George Liao; Sandy Harper; Guoliang Yang; David W Speicher; Dennis E Discher
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

5.  Heat capacity changes in RNA folding: application of perturbation theory to hammerhead ribozyme cold denaturation.

Authors:  Peter J Mikulecky; Andrew L Feig
Journal:  Nucleic Acids Res       Date:  2004-07-28       Impact factor: 16.971

6.  Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements.

Authors:  Xinghua Zhang; Hu Chen; Hongxia Fu; Patrick S Doyle; Jie Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

7.  A three-state model with loop entropy for the overstretching transition of DNA.

Authors:  Thomas R Einert; Douglas B Staple; Hans-Jürgen Kreuzer; Roland R Netz
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

Review 8.  Single-molecule stretching studies of RNA chaperones.

Authors:  Hao Wu; Ioulia Rouzina; Mark C Williams
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

9.  Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.

Authors:  Sarah A Harris; Zara A Sands; Charles A Laughton
Journal:  Biophys J       Date:  2004-12-30       Impact factor: 4.033

Review 10.  Optical tweezers experiments resolve distinct modes of DNA-protein binding.

Authors:  Micah J McCauley; Mark C Williams
Journal:  Biopolymers       Date:  2009-04       Impact factor: 2.505

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