Literature DB >> 9153432

Structure of the endoglucanase I from Fusarium oxysporum: native, cellobiose, and 3,4-epoxybutyl beta-D-cellobioside-inhibited forms, at 2.3 A resolution.

G Sulzenbacher1, M Schülein, G J Davies.   

Abstract

The mechanisms involved in the enzymatic degradation of cellulose are of great ecological and commercial importance. The breakdown of cellulose by fungal species is performed by a consortium of free enzymes, known as cellobiohydrolases and endoglucanases, which are found in many of the 57 glycosyl hydrolase families. The structure of the endoglucanase I (EG I), found in glycosyl hydrolase family 7, from the thermophilic fungus Fusarium oxysporum has been solved at 2.3 A resolution. In addition to the native enzyme, structures have also been determined with both the affinity label, 3,4-epoxybutyl beta-D-cellobioside, and the reaction product cellobiose. The affinity label is covalently bound, as expected, to the catalytic nucleophile, Glu197, with clear evidence for binding of both the R and S stereoisomers. Cellobiose is found bound to the -2 and -1 subsites of the enzyme. In marked contrast to the structure of EG I with a nonhydrolyzable thiosaccharide analog, which spanned the -2, -1, and +1 subsites and which had a skew-boat conformation for the -1 subsite sugar [Sulzenbacher, G., et al. (1996) Biochemistry 35, 15280-15287], the cellobiose complex shows no pyranoside ring distortion in the -1 subsite, implying that strain is induced primarily by the additional +1 subsite interactions and that the product is found, as expected, in its unstrained conformation.

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Year:  1997        PMID: 9153432     DOI: 10.1021/bi962963+

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  Redefining XynA from Penicillium funiculosum IMI 378536 as a GH7 cellobiohydrolase.

Authors:  Hélène Texier; Claire Dumon; Virginie Neugnot-Roux; Marc Maestracci; Michael J O'Donohue
Journal:  J Ind Microbiol Biotechnol       Date:  2012-07-10       Impact factor: 3.346

2.  The three-dimensional structure of the cellobiohydrolase Cel7A from Aspergillus fumigatus at 1.5 Å resolution.

Authors:  Olga V Moroz; Michelle Maranta; Tarana Shaghasi; Paul V Harris; Keith S Wilson; Gideon J Davies
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-01       Impact factor: 1.056

3.  Processivity and enzymatic mode of a glycoside hydrolase family 5 endoglucanase from Volvariella volvacea.

Authors:  Fei Zheng; Shaojun Ding
Journal:  Appl Environ Microbiol       Date:  2012-11-30       Impact factor: 4.792

4.  Computational investigation of the pH dependence of loop flexibility and catalytic function in glycoside hydrolases.

Authors:  Lintao Bu; Michael F Crowley; Michael E Himmel; Gregg T Beckham
Journal:  J Biol Chem       Date:  2013-03-15       Impact factor: 5.157

5.  The mechanism of substrate (aglycone) specificity in beta -glucosidases is revealed by crystal structures of mutant maize beta -glucosidase-DIMBOA, -DIMBOAGlc, and -dhurrin complexes.

Authors:  M Czjzek; M Cicek; V Zamboni; D R Bevan; B Henrissat; A Esen
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

6.  Structure and function of Humicola insolens family 6 cellulases: structure of the endoglucanase, Cel6B, at 1.6 A resolution.

Authors:  G J Davies; A M Brzozowski; M Dauter; A Varrot; M Schülein
Journal:  Biochem J       Date:  2000-05-15       Impact factor: 3.857

7.  Serratia marcescens chitobiase is a retaining glycosidase utilizing substrate acetamido group participation.

Authors:  S Drouillard; S Armand; G J Davies; C E Vorgias; B Henrissat
Journal:  Biochem J       Date:  1997-12-15       Impact factor: 3.857

8.  Distinguishing the differences in β-glycosylceramidase folds, dynamics, and actions informs therapeutic uses.

Authors:  Fredj Ben Bdira; Marta Artola; Herman S Overkleeft; Marcellus Ubbink; Johannes M F G Aerts
Journal:  J Lipid Res       Date:  2018-10-02       Impact factor: 5.922

9.  Crystal structures of Melanocarpus albomyces cellobiohydrolase Cel7B in complex with cello-oligomers show high flexibility in the substrate binding.

Authors:  Tarja Parkkinen; Anu Koivula; Jari Vehmaanperä; Juha Rouvinen
Journal:  Protein Sci       Date:  2008-05-21       Impact factor: 6.725

10.  Crystal structure of the family 7 endoglucanase I (Cel7B) from Humicola insolens at 2.2 A resolution and identification of the catalytic nucleophile by trapping of the covalent glycosyl-enzyme intermediate.

Authors:  L F MacKenzie; G Sulzenbacher; C Divne; T A Jones; H F Wöldike; M Schülein; S G Withers; G J Davies
Journal:  Biochem J       Date:  1998-10-15       Impact factor: 3.857

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