Literature DB >> 9023122

PCR-mediated direct gene disruption in Schizosaccharomyces pombe.

R Kaur1, S S Ingavale, A K Bachhawat.   

Abstract

We have examined the feasibility and efficiency of PCR-mediated direct gene disruptions in the fission yeast Schizosaccharomyces pombe. In the present study, the S.pombe ura4+ gene was amplified by PCR with oligonucleotides that had short flanking regions ( approximately 40 bp) to the target gene. Using this purified PCR product we were able to disrupt genes in an S. pombe strain bearing aura4 deletion, with an efficiency ranging between 1 and 3% among selected transformants. The results indicated that despite S.pombe's preference for non-homologous or illegitimate recombination, even very short stretches of homologous regions could be used to target genes at a defined frequency in this organism. The successful disruption of four independent genes (sts1+, gcs1+, gsh2+and hmt1+) by this method further demonstrates that, despite the relatively low efficiency, the method is very feasible, and it's simplicity, especially when coupled to phenotype-based screening, should greatly facilitate disruption of genes in S.pombe.

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Year:  1997        PMID: 9023122      PMCID: PMC146527          DOI: 10.1093/nar/25.5.1080

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  apd1+, a gene required for red pigment formation in ade6 mutants of Schizosaccharomyces pombe, encodes an enzyme required for glutathione biosynthesis: a role for glutathione and a glutathione-conjugate pump.

Authors:  B Chaudhuri; S Ingavale; A K Bachhawat
Journal:  Genetics       Date:  1997-01       Impact factor: 4.562

2.  A study of integrative transformation in Schizosaccharomyces pombe.

Authors:  B Grallert; P Nurse; T E Patterson
Journal:  Mol Gen Genet       Date:  1993-04

3.  A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae.

Authors:  A Baudin; O Ozier-Kalogeropoulos; A Denouel; F Lacroute; C Cullin
Journal:  Nucleic Acids Res       Date:  1993-07-11       Impact factor: 16.971

4.  Genetic engineering of Schizosaccharomyces pombe: a system for gene disruption and replacement using the ura4 gene as a selectable marker.

Authors:  C Grimm; J Kohli; J Murray; K Maundrell
Journal:  Mol Gen Genet       Date:  1988-12

5.  Structural analyses of DNA fragments integrated by illegitimate recombination in Schizosaccharomyces pombe.

Authors:  K Tatebayashi; J Kato; H Ikeda
Journal:  Mol Gen Genet       Date:  1994-07-25

6.  Fission yeast sts1+ gene encodes a protein similar to the chicken lamin B receptor and is implicated in pleiotropic drug-sensitivity, divalent cation-sensitivity, and osmoregulation.

Authors:  M Shimanuki; M Goebl; M Yanagida; T Toda
Journal:  Mol Biol Cell       Date:  1992-03       Impact factor: 4.138

7.  Transformation of Schizosaccharomyces pombe by non-homologous, unstable integration of plasmids in the genome.

Authors:  A P Wright; K Maundrell; S Shall
Journal:  Curr Genet       Date:  1986       Impact factor: 3.886

8.  Efficient targeted integration at leu1-32 and ura4-294 in Schizosaccharomyces pombe.

Authors:  J B Keeney; J D Boeke
Journal:  Genetics       Date:  1994-03       Impact factor: 4.562

9.  New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae.

Authors:  A Wach; A Brachat; R Pöhlmann; P Philippsen
Journal:  Yeast       Date:  1994-12       Impact factor: 3.239

10.  Heavy metal tolerance in the fission yeast requires an ATP-binding cassette-type vacuolar membrane transporter.

Authors:  D F Ortiz; L Kreppel; D M Speiser; G Scheel; G McDonald; D W Ow
Journal:  EMBO J       Date:  1992-10       Impact factor: 11.598

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  8 in total

1.  Insertional mutagenesis based on illegitimate recombination in Schizosaccharomyces pombe.

Authors:  G Chua; L Taricani; W Stangle; P G Young
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

2.  High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology.

Authors:  M D Krawchuk; W P Wahls
Journal:  Yeast       Date:  1999-09-30       Impact factor: 3.239

3.  Involvement of rhp23, a Schizosaccharomyces pombe homolog of the human HHR23A and Saccharomyces cerevisiae RAD23 nucleotide excision repair genes, in cell cycle control and protein ubiquitination.

Authors:  Robert T Elder; Xiang-qian Song; Mingzhong Chen; Kevin M Hopkins; Howard B Lieberman; Yuqi Zhao
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

4.  Schizosaccharomyces pombe essential genes: a pilot study.

Authors:  Anabelle Decottignies; Isabel Sanchez-Perez; Paul Nurse
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

5.  Six new amino acid-auxotrophic markers for targeted gene integration and disruption in fission yeast.

Authors:  Yan Ma; Reiko Sugiura; Mariko Saito; Atsushi Koike; Susie Ong Sio; Yasuko Fujita; Kaoru Takegawa; Takayoshi Kuno
Journal:  Curr Genet       Date:  2007-07-11       Impact factor: 3.886

6.  New and Redesigned pRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae.

Authors:  Mark K Chee; Steven B Haase
Journal:  G3 (Bethesda)       Date:  2012-05-01       Impact factor: 3.154

7.  PRIMED: PRIMEr database for deleting and tagging all fission and budding yeast genes developed using the open-source genome retrieval script (GRS).

Authors:  Michael T Cummings; Richard I Joh; Mo Motamedi
Journal:  PLoS One       Date:  2015-02-02       Impact factor: 3.240

8.  Deletion of the CgTPI gene encoding triose phosphate isomerase of Candida glycerinogenes inhibits the biosynthesis of glycerol.

Authors:  Zhang Yongguang; Shen Wei; Rao Zhiming; Fang Huiying; Zhuge Jian
Journal:  Curr Microbiol       Date:  2007-07-04       Impact factor: 2.343

  8 in total

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