Literature DB >> 17622533

Six new amino acid-auxotrophic markers for targeted gene integration and disruption in fission yeast.

Yan Ma1, Reiko Sugiura, Mariko Saito, Atsushi Koike, Susie Ong Sio, Yasuko Fujita, Kaoru Takegawa, Takayoshi Kuno.   

Abstract

Fission yeast Schizosaccharomyces pombe is amenable to genetics and is an excellent model system for studying eukaryotic cell biology. However, auxotrophic markers that can be used for both targeted gene integration and disruption are very limited. Here we performed a forward genetic screen in an effort to develop a new set of selectable markers for use in this yeast. Mutants that were auxotrophic for arginine, asparagine, cysteine, lysine, methionine and phenylalanine were isolated. Six genes were analyzed in detail and the mutations in the genes were identified. Among these six are three new genes: asn1 (+), cys2 (+) and pha2 (+) were required for biosynthesis of asparagine, cysteine and phenylalanine, respectively. New alleles of arg1 (+), lys3 (+) and met6 (+) were also identified. All of these genes proved to be suitable as selectable markers for targeted gene integration and disruption. We also showed that in Schizosaccharomyces pombe there are two apparent homologues of Saccharomyces cerevisiae MET2: the previously known met6 (+), and SPBC106.17c (named cys2 (+)). The cys2 mutation required cysteine rather than methionine. These new tools, specifically, new selectable markers, will be useful in further genetic and biological studies in fission yeast.

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Year:  2007        PMID: 17622533     DOI: 10.1007/s00294-007-0142-1

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  41 in total

1.  Homocysteine accumulation causes a defect in purine biosynthesis: further characterization of Schizosaccharomyces pombe methionine auxotrophs.

Authors:  Yasuko Fujita; Eiko Ukena; Haruyuki Iefuji; Yuko Giga-Hama; Kaoru Takegawa
Journal:  Microbiology (Reading)       Date:  2006-02       Impact factor: 2.777

2.  Real-time monitoring of calcineurin activity in living cells: evidence for two distinct Ca2+-dependent pathways in fission yeast.

Authors:  Lu Deng; Reiko Sugiura; Mai Takeuchi; Masahiro Suzuki; Hidemine Ebina; Tomonori Takami; Atsushi Koike; Shiori Iba; Takayoshi Kuno
Journal:  Mol Biol Cell       Date:  2006-08-23       Impact factor: 4.138

Review 3.  Cytokinesis in eukaryotes.

Authors:  David A Guertin; Susanne Trautmann; Dannel McCollum
Journal:  Microbiol Mol Biol Rev       Date:  2002-06       Impact factor: 11.056

4.  PCR-mediated direct gene disruption in Schizosaccharomyces pombe.

Authors:  R Kaur; S S Ingavale; A K Bachhawat
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Development of a genetic transformation system using new selectable markers for fission yeast Schizosaccharomyces pombe.

Authors:  Yasuko Fujita; Yuko Giga-Hama; Kaoru Takegawa
Journal:  Yeast       Date:  2005-02       Impact factor: 3.239

6.  Cloning of the ASN1 and ASN2 genes encoding asparagine synthetases in Saccharomyces cerevisiae: differential regulation by the CCAAT-box-binding factor.

Authors:  V D Dang; M Valens; M Bolotin-Fukuhara; B Daignan-Fornier
Journal:  Mol Microbiol       Date:  1996-11       Impact factor: 3.501

7.  Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.

Authors:  J Bähler; J Q Wu; M S Longtine; N G Shah; A McKenzie; A B Steever; A Wach; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

8.  Molecular cloning and regulation of the expression of the MET2 gene of Saccharomyces cerevisiae.

Authors:  M Baroni; S Livian; E Martegani; L Alberghina
Journal:  Gene       Date:  1986       Impact factor: 3.688

Review 9.  Schizosaccharomyces pombe: a model for molecular studies of eukaryotic genes.

Authors:  Y Zhao; H B Lieberman
Journal:  DNA Cell Biol       Date:  1995-05       Impact factor: 3.311

10.  Global transcriptional responses of fission yeast to environmental stress.

Authors:  Dongrong Chen; W Mark Toone; Juan Mata; Rachel Lyne; Gavin Burns; Katja Kivinen; Alvis Brazma; Nic Jones; Jürg Bähler
Journal:  Mol Biol Cell       Date:  2003-01       Impact factor: 4.138

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  15 in total

1.  MAP kinase kinase kinase (MAPKKK)-dependent and -independent activation of Sty1 stress MAPK in fission yeast.

Authors:  Xin Zhou; Yan Ma; Reiko Sugiura; Daiki Kobayashi; Masahiro Suzuki; Lu Deng; Takayoshi Kuno
Journal:  J Biol Chem       Date:  2010-08-20       Impact factor: 5.157

2.  Identification and refinement of two strong constitutive promoters for gene expression system of Schizosaccharomyces pombe.

Authors:  Hongcheng Wang; Haiyang Wang; Meng Wang; Lei Zhang; Ren Wang; Yanzhen Mei; Weilan Shao
Journal:  World J Microbiol Biotechnol       Date:  2014-01-23       Impact factor: 3.312

3.  Isolation of a fission yeast mutant that is sensitive to valproic acid and defective in the gene encoding Ric1, a putative component of Ypt/Rab-specific GEF for Ryh1 GTPase.

Authors:  Yan Ma; Reiko Sugiura; Lili Zhang; Xin Zhou; Mai Takeuchi; Yi He; Takayoshi Kuno
Journal:  Mol Genet Genomics       Date:  2010-07-10       Impact factor: 3.291

4.  Iron-dependent remodeling of fungal metabolic pathways associated with ferrichrome biosynthesis.

Authors:  Alexandre Mercier; Simon Labbé
Journal:  Appl Environ Microbiol       Date:  2010-04-30       Impact factor: 4.792

5.  Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.

Authors:  Karine Bastard; Alain Perret; Aline Mariage; Thomas Bessonnet; Agnès Pinet-Turpault; Jean-Louis Petit; Ekaterina Darii; Pascal Bazire; Carine Vergne-Vaxelaire; Clémence Brewee; Adrien Debard; Virginie Pellouin; Marielle Besnard-Gonnet; François Artiguenave; Claudine Médigue; David Vallenet; Antoine Danchin; Anne Zaparucha; Jean Weissenbach; Marcel Salanoubat; Véronique de Berardinis
Journal:  Nat Chem Biol       Date:  2017-06-05       Impact factor: 15.040

6.  Novel biosynthetic pathway for sulfur amino acids in Cryptococcus neoformans.

Authors:  Akio Toh-E; Misako Ohkusu; Kiminori Shimizu; Naruhiko Ishiwada; Akira Watanabe; Katsuhiko Kamei
Journal:  Curr Genet       Date:  2017-11-20       Impact factor: 3.886

7.  Cation diffusion facilitator Cis4 is implicated in Golgi membrane trafficking via regulating zinc homeostasis in fission yeast.

Authors:  Yue Fang; Reiko Sugiura; Yan Ma; Tomoko Yada-Matsushima; Hirotatsu Umeno; Takayoshi Kuno
Journal:  Mol Biol Cell       Date:  2008-01-16       Impact factor: 4.138

8.  Possible involvement of nitric oxide and reactive oxygen species in glucose deprivation-induced activation of transcription factor rst2.

Authors:  Toshiaki Kato; Xin Zhou; Yan Ma
Journal:  PLoS One       Date:  2013-10-14       Impact factor: 3.240

9.  Transient receptor potential (TRP) and Cch1-Yam8 channels play key roles in the regulation of cytoplasmic Ca2+ in fission yeast.

Authors:  Yan Ma; Reiko Sugiura; Atsushi Koike; Hidemine Ebina; Susie O Sio; Takayoshi Kuno
Journal:  PLoS One       Date:  2011-07-19       Impact factor: 3.240

10.  Studies on the roles of clathrin-mediated membrane trafficking and zinc transporter Cis4 in the transport of GPI-anchored proteins in fission yeast.

Authors:  Wurentuya Jaiseng; Yue Fang; Yan Ma; Reiko Sugiura; Takayoshi Kuno
Journal:  PLoS One       Date:  2012-07-25       Impact factor: 3.240

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