Literature DB >> 9016536

MmtDB: a Metazoa mitochondrial DNA variants database.

D Calò1, A De Pascali, D Sasanelli, F Tanzariello, M Tommaseo Ponzetta, C Saccone, M Attimonelli.   

Abstract

The present paper describes the structure of MmtDB-a specialized database designed to collect Metazoa mitochondrial DNA variants. Priority in the data collection is given to the Metazoa species for which a large amount of variants is available, as it is the case for human variants. Starting from the sequences available in the Nucleotide Sequence Databases, the redundant sequences are removed and new sequences from other sources are added. Value-added information are associated to each variant sequence, e.g. analysed region, experimental method, tissue and cell lines, population data, sex, age, family code and information about the variation events (nucleotide position, involved gene, restriction site's gain or loss). Cross-references are introduced to the EMBL Data Library, as well as an internal cross-referencing among MmtDB entries according to their tissual, heteroplasmic, familiar and aplotypical correlation. MmtDB can be accessed through the World Wide Web at URL [see text].

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Year:  1997        PMID: 9016536      PMCID: PMC146362          DOI: 10.1093/nar/25.1.200

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

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Authors:  A M Kogelnik; M T Lott; M D Brown; S B Navathe; D C Wallace
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

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Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

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Journal:  Nature       Date:  1987 Jan 1-7       Impact factor: 49.962

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Journal:  Mol Phylogenet Evol       Date:  1996-02       Impact factor: 4.286

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Review 9.  Mitochondrial DNA variation in human populations and implications for detection of mitochondrial DNA mutations of pathological significance.

Authors:  A Torroni; D C Wallace
Journal:  J Bioenerg Biomembr       Date:  1994-06       Impact factor: 2.945

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Journal:  J Cell Biol       Date:  1963-12       Impact factor: 10.539

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  3 in total

1.  The Organelle Genome Database Project (GOBASE).

Authors:  M Korab-Laskowska; P Rioux; N Brossard; T G Littlejohn; M W Gray; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 2.  Mitochondrial DNA mutations and pathogenesis.

Authors:  E A Schon; E Bonilla; S DiMauro
Journal:  J Bioenerg Biomembr       Date:  1997-04       Impact factor: 2.945

3.  The mitBASE human dataset structure.

Authors:  M Attimonelli; D Caló; J M Cooper; A de Montalvo; F Licciulli; D Sasanelli; K Stevens; B S Malladi; C Saccone; A H Shapira
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

  3 in total

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