Literature DB >> 9016514

The Signal Recognition Particle Database (SRPDB).

C Zwieb1, N Larsen.   

Abstract

The SRPDB (Signal Recognition Particle Database) offers aligned SRP RNA and SRP protein sequences, phylogenetically ordered and annotated. This release adds three SRP RNA sequences (totaling 96 SRP RNA sequences) and 11 SRP protein sequences (a total of 39 protein sequences from SRP9, SRP14, SRP19, SRP21, SRP54, SRP68 or SRP72). Also downloadable are sample SRP RNA secondary structure diagrams, a three-dimensional model of the human SRP RNA, search motifs and software.

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Year:  1997        PMID： 9016514      PMCID： PMC146417          DOI： 10.1093/nar/25.1.107

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  13 in total

1.  Recognition of a tetranucleotide loop of signal recognition particle RNA by protein SRP19.

Authors:  C Zwieb
Journal:  J Biol Chem       Date:  1992-08-05       Impact factor: 5.157

2.  SRP-RNA sequence alignment and secondary structure.

Authors:  N Larsen; C Zwieb
Journal:  Nucleic Acids Res       Date:  1991-01-25       Impact factor: 16.971

3.  Comparative analysis of tertiary structure elements in signal recognition particle RNA.

Authors:  C Zwieb; F Müller; N Larsen
Journal:  Fold Des       Date:  1996

4.  Isolation and characterization of a cDNA clone encoding the 19 kDa protein of signal recognition particle (SRP): expression and binding to 7SL RNA.

Authors:  K Lingelbach; C Zwieb; J R Webb; C Marshallsay; P J Hoben; P Walter; B Dobberstein
Journal:  Nucleic Acids Res       Date:  1988-10-25       Impact factor: 16.971

5.  GenBank.

Authors:  D A Benson; M Boguski; D J Lipman; J Ostell
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

6.  The European Bioinformatics Institute (EBI) databases.

Authors:  P Rodriguez-Tomé; P J Stoehr; G N Cameron; T P Flores
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

7.  The Ribosomal Database Project (RDP).

Authors:  B L Maidak; G J Olsen; N Larsen; R Overbeek; M J McCaughey; C R Woese
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

8.  Site-directed mutagenesis of signal-recognition particle RNA. Identification of the nucleotides in helix 8 required for interaction with protein SRP19.

Authors:  C Zwieb
Journal:  Eur J Biochem       Date:  1994-06-15

9.  The S. cerevisiae SEC65 gene encodes a component of yeast signal recognition particle with homology to human SRP19.

Authors:  C J Stirling; E W Hewitt
Journal:  Nature       Date:  1992-04-09       Impact factor: 49.962

10.  Subunits of the Saccharomyces cerevisiae signal recognition particle required for its functional expression.

Authors:  J D Brown; B C Hann; K F Medzihradszky; M Niwa; A L Burlingame; P Walter
Journal:  EMBO J       Date:  1994-09-15       Impact factor: 11.598
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  2 in total

1.  Interaction of rice and human SRP19 polypeptides with signal recognition particle RNA.

Authors:  K Chittenden; K Gowda; S D Black; C Zwieb
Journal:  Plant Mol Biol       Date:  1997-06       Impact factor: 4.076

2.  Localization of signal recognition particle RNA in the nucleolus of mammalian cells.

Authors:  M R Jacobson; T Pederson
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205
  2 in total

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