Literature DB >> 9012795

Conferring RNA polymerase activity to a DNA polymerase: a single residue in reverse transcriptase controls substrate selection.

G Gao1, M Orlova, M M Georgiadis, W A Hendrickson, S P Goff.   

Abstract

The traditional classification of nucleic acid polymerases as either DNA or RNA polymerases is based, in large part, on their fundamental preference for the incorporation of either deoxyribonucleotides or ribonucleotides during chain elongation. The refined structure determination of Moloney murine leukemia virus reverse transcriptase, a strict DNA polymerase, recently allowed the prediction that a single amino acid residue at the active site might be responsible for the discrimination against the 2'OH group of an incoming ribonucleotide. Mutation of this residue resulted in a variant enzyme now capable of acting as an RNA polymerase. In marked contrast to the wild-type enzyme, the K(m) of the mutant enzyme for ribonucleotides was comparable to that for deoxyribonucleotides. The results are consistent with proposals of a common evolutionary origin for both classes of enzymes and support models of a common mechanism of nucleic acid synthesis underlying catalysis by all such polymerases.

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Year:  1997        PMID: 9012795      PMCID: PMC19524          DOI: 10.1073/pnas.94.2.407

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

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Authors:  K A Johnson
Journal:  Annu Rev Biochem       Date:  1993       Impact factor: 23.643

2.  Crystal structure of bacteriophage T7 RNA polymerase at 3.3 A resolution.

Authors:  R Sousa; Y J Chung; J P Rose; B C Wang
Journal:  Nature       Date:  1993-08-12       Impact factor: 49.962

3.  An attempt to unify the structure of polymerases.

Authors:  M Delarue; O Poch; N Tordo; D Moras; P Argos
Journal:  Protein Eng       Date:  1990-05

4.  A novel in situ colony screening method to detect human immunodeficiency virus reverse transcriptase activity expressed in bacteria. Isolation of pseudorevertants of reverse transcriptase mutants.

Authors:  V R Prasad; S P Goff
Journal:  J Biol Chem       Date:  1989-10-05       Impact factor: 5.157

5.  RNA-dependent DNA polymerase in virions of RNA tumour viruses.

Authors:  D Baltimore
Journal:  Nature       Date:  1970-06-27       Impact factor: 49.962

6.  Isolation and properties of Moloney murine leukemia virus mutants: use of a rapid assay for release of virion reverse transcriptase.

Authors:  S Goff; P Traktman; D Baltimore
Journal:  J Virol       Date:  1981-04       Impact factor: 5.103

7.  Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP.

Authors:  D L Ollis; P Brick; R Hamlin; N G Xuong; T A Steitz
Journal:  Nature       Date:  1985 Feb 28-Mar 6       Impact factor: 49.962

8.  Structure of HIV-1 reverse transcriptase/DNA complex at 7 A resolution showing active site locations.

Authors:  E Arnold; A Jacobo-Molina; R G Nanni; R L Williams; X Lu; J Ding; A D Clark; A Zhang; A L Ferris; P Clark
Journal:  Nature       Date:  1992-05-07       Impact factor: 49.962

9.  Mechanistic implications from the structure of a catalytic fragment of Moloney murine leukemia virus reverse transcriptase.

Authors:  M M Georgiadis; S M Jessen; C M Ogata; A Telesnitsky; S P Goff; W A Hendrickson
Journal:  Structure       Date:  1995-09-15       Impact factor: 5.006

10.  RNase H domain mutations affect the interaction between Moloney murine leukemia virus reverse transcriptase and its primer-template.

Authors:  A Telesnitsky; S P Goff
Journal:  Proc Natl Acad Sci U S A       Date:  1993-02-15       Impact factor: 11.205

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  92 in total

1.  Use of DNA, RNA, and chimeric templates by a viral RNA-dependent RNA polymerase: evolutionary implications for the transition from the RNA to the DNA world.

Authors:  R W Siegel; L Bellon; L Beigelman; C C Kao
Journal:  J Virol       Date:  1999-08       Impact factor: 5.103

2.  Analysis of mutations at positions 115 and 116 in the dNTP binding site of HIV-1 reverse transcriptase.

Authors:  P L Boyer; S G Sarafianos; E Arnold; S H Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

3.  Template definition by Tetrahymena telomerase reverse transcriptase.

Authors:  M C Miller; J K Liu; K Collins
Journal:  EMBO J       Date:  2000-08-15       Impact factor: 11.598

4.  Identifying a core RNA polymerase surface critical for interactions with a sigma-like specificity factor.

Authors:  P F Cliften; S H Jang; J A Jaehning
Journal:  Mol Cell Biol       Date:  2000-09       Impact factor: 4.272

5.  Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus.

Authors:  S Bressanelli; L Tomei; A Roussel; I Incitti; R L Vitale; M Mathieu; R De Francesco; F A Rey
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

Review 6.  Viral polymerases.

Authors:  Kyung H Choi
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

7.  The N348I mutation at the connection subdomain of HIV-1 reverse transcriptase decreases binding to nevirapine.

Authors:  Matthew M Schuckmann; Bruno Marchand; Atsuko Hachiya; Eiichi N Kodama; Karen A Kirby; Kamalendra Singh; Stefan G Sarafianos
Journal:  J Biol Chem       Date:  2010-09-27       Impact factor: 5.157

8.  Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.

Authors:  Weina Wang; Eugene Y Wu; Homme W Hellinga; Lorena S Beese
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

Review 9.  Mechanistic cross-talk between DNA/RNA polymerase enzyme kinetics and nucleotide substrate availability in cells: Implications for polymerase inhibitor discovery.

Authors:  Si'Ana A Coggins; Bijan Mahboubi; Raymond F Schinazi; Baek Kim
Journal:  J Biol Chem       Date:  2020-07-31       Impact factor: 5.157

10.  A novel mechanism of sugar selection utilized by a human X-family DNA polymerase.

Authors:  Jessica A Brown; Kevin A Fiala; Jason D Fowler; Shanen M Sherrer; Sean A Newmister; Wade W Duym; Zucai Suo
Journal:  J Mol Biol       Date:  2009-11-06       Impact factor: 5.469

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