Literature DB >> 8990173

SC35-mediated reconstitution of splicing in U2AF-depleted nuclear extract.

A M MacMillan1, P S McCaw, J D Crispino, P A Sharp.   

Abstract

Assembly of the mammalian spliceosome is known to proceed in an ordered fashion through several discrete complexes, but the mechanism of this assembly process may not be universal. In an early step, pre-mRNAs are committed to the splicing pathway through association with U1 small nuclear ribonucleoprotein (snRNP) and non-snRNP splicing factors, including U2AF and members of the SR protein family. As a means of studying the steps of spliceosome assembly, we have prepared HeLa nuclear extracts specifically depleted of the splicing factor U2AF. Surprisingly, the SR protein SC35 can functionally substitute for U2AF65 in the reconstitution of pre-mRNA splicing in U2AF-depleted extracts. This reconstitution is substrate-specific and is reminiscent of the SC35-mediated reconstitution of splicing in extracts depleted of U1 snRNP. However, SC35 reconstitution of splicing in U2AF-depleted extracts is dependent on the presence of functional U1 snRNP. These observations suggest that there are at least three distinguishable mechanisms for the binding of U2 snRNP to the pre-mRNA, including U2AF-dependent and -independent pathways.

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Year:  1997        PMID: 8990173      PMCID: PMC19256          DOI: 10.1073/pnas.94.1.133

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Electrophoretic separation of complexes involved in the splicing of precursors to mRNAs.

Authors:  M M Konarska; P A Sharp
Journal:  Cell       Date:  1986-09-12       Impact factor: 41.582

Review 2.  The superfamily of arginine/serine-rich splicing factors.

Authors:  X D Fu
Journal:  RNA       Date:  1995-09       Impact factor: 4.942

3.  A U6 snRNA:pre-mRNA interaction can be rate-limiting for U1-independent splicing.

Authors:  J D Crispino; P A Sharp
Journal:  Genes Dev       Date:  1995-09-15       Impact factor: 11.361

4.  Intrinsic U2AF binding is modulated by exon enhancer signals in parallel with changes in splicing activity.

Authors:  Z Wang; H M Hoffmann; P J Grabowski
Journal:  RNA       Date:  1995-03       Impact factor: 4.942

5.  SR proteins can compensate for the loss of U1 snRNP functions in vitro.

Authors:  W Y Tarn; J A Steitz
Journal:  Genes Dev       Date:  1994-11-15       Impact factor: 11.361

6.  Dynamic association of proteins with the pre-mRNA branch region.

Authors:  A M MacMillan; C C Query; C R Allerson; S Chen; G L Verdine; P A Sharp
Journal:  Genes Dev       Date:  1994-12-15       Impact factor: 11.361

7.  Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.

Authors:  J D Dignam; R M Lebovitz; R G Roeder
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

8.  SR proteins promote the first specific recognition of Pre-mRNA and are present together with the U1 small nuclear ribonucleoprotein particle in a general splicing enhancer complex.

Authors:  D Staknis; R Reed
Journal:  Mol Cell Biol       Date:  1994-11       Impact factor: 4.272

9.  The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities.

Authors:  R Tacke; J L Manley
Journal:  EMBO J       Date:  1995-07-17       Impact factor: 11.598

10.  Association of nuclear matrix antigens with exon-containing splicing complexes.

Authors:  B J Blencowe; J A Nickerson; R Issner; S Penman; P A Sharp
Journal:  J Cell Biol       Date:  1994-11       Impact factor: 10.539

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  22 in total

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Authors:  M H Lambermon; G G Simpson; D A Wieczorek Kirk; M Hemmings-Mieszczak; U Klahre; W Filipowicz
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

2.  Genomic mRNA profiling reveals compensatory mechanisms for the requirement of the essential splicing factor U2AF.

Authors:  Vinod Sridharan; Joseph Heimiller; Ravinder Singh
Journal:  Mol Cell Biol       Date:  2010-12-13       Impact factor: 4.272

3.  STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis.

Authors:  Byeong-ha Lee; Avnish Kapoor; Jianhua Zhu; Jian-Kang Zhu
Journal:  Plant Cell       Date:  2006-06-02       Impact factor: 11.277

4.  Characterization of a U2AF-independent commitment complex (E') in the mammalian spliceosome assembly pathway.

Authors:  Oliver A Kent; Dustin B Ritchie; Andrew M Macmillan
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

5.  Genomic functions of U2AF in constitutive and regulated splicing.

Authors:  Tongbin Wu; Xiang-Dong Fu
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

6.  Repression of prespliceosome complex formation at two distinct steps by Fox-1/Fox-2 proteins.

Authors:  Hua-Lin Zhou; Hua Lou
Journal:  Mol Cell Biol       Date:  2008-06-23       Impact factor: 4.272

7.  G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection.

Authors:  A J McCullough; S M Berget
Journal:  Mol Cell Biol       Date:  1997-08       Impact factor: 4.272

8.  A 5' splice site-proximal enhancer binds SF1 and activates exon bridging of a microexon.

Authors:  T Carlo; R Sierra; S M Berget
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

9.  Evidence for substrate-specific requirement of the splicing factor U2AF(35) and for its function after polypyrimidine tract recognition by U2AF(65).

Authors:  S Guth; C Martínez; R K Gaur; J Valcárcel
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

10.  The conserved RNA recognition motif 3 of U2 snRNA auxiliary factor (U2AF 65) is essential in vivo but dispensable for activity in vitro.

Authors:  Hiren Banerjee; Andrew Rahn; Bharat Gawande; Sabine Guth; Juan Valcarcel; Ravinder Singh
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

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