Literature DB >> 8978702

The G222D mutation in elongation factor Tu inhibits the codon-induced conformational changes leading to GTPase activation on the ribosome.

E Vorstenbosch1, T Pape, M V Rodnina, B Kraal, W Wintermeyer.   

Abstract

Elongation factor Tu (EF-Tu) from Escherichia coli carrying the mutation G222D is unable to hydrolyze GTP on the ribosome and to sustain polypeptide synthesis at near physiological Mg2+ concentration, although the interactions with guanine nucleotides and aminoacyl-tRNA are not changed significantly. GTPase and polypeptide synthesis activities are restored by increasing the Mg2+ concentration. Here we report a pre-steady-state kinetic study of the binding of the ternary complexes of wild-type and mutant EF-Tu with Phe-tRNA(Phe) and GTP to the A site of poly(U)-programed ribosomes. The kinetic parameters of initial binding to the ribosome and subsequent codon-anticodon interaction are similar for mutant and wild-type EF-Tu, independent of the Mg2+ concentration, suggesting that the initial interaction with the ribosome is not affected by the mutation. Codon recognition following initial binding is also not affected by the mutation. The main effect of the G222D mutation is the inhibition, at low Mg2+ concentration, of codon-induced structural transitions of the tRNA and, in particular, their transmission to EF-Tu that precedes GTP hydrolysis and the subsequent steps of A-site binding. Increasing the Mg2+ concentration to 10 mM restores the complete reaction sequence of A-site binding at close to wild-type rates. The inhibition of the structural transitions is probably due to the interference of the negative charge introduced by the mutation with negative charges either of the 3' terminus of the tRNA, bound in the vicinity of the mutated amino acid in domain 2 of EF-Tu, or of the ribosome. Increasing the Mg2+ concentration appears to overcome the inhibition by screening the negative charges.

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Year:  1996        PMID: 8978702      PMCID: PMC452500     

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  33 in total

1.  Standard Gibbs free energy, enthalpy, and entropy changes as a function of pH and pMg for several reactions involving adenosine phosphates.

Authors:  R A Alberty
Journal:  J Biol Chem       Date:  1969-06-25       Impact factor: 5.157

2.  Guanosine 5'-O-(3-thiotriphosphate) as an analog of GTP in protein biosynthesis. The effects of temperature and polycations on the accuracy of initial recognition of aminoacyl-tRNA ternary complexes by ribosomes.

Authors:  A M Karim; R C Thompson
Journal:  J Biol Chem       Date:  1986-03-05       Impact factor: 5.157

Review 3.  Mechanism of action of kirromycin-like antibiotics.

Authors:  A Parmeggiani; G W Swart
Journal:  Annu Rev Microbiol       Date:  1985       Impact factor: 15.500

Review 4.  Properties and regulation of the GTPase activities of elongation factors Tu and G, and of initiation factor 2.

Authors:  A Parmeggiani; G Sander
Journal:  Mol Cell Biochem       Date:  1981-03-27       Impact factor: 3.396

5.  A mutant elongation factor Tu which does not immobilize the ribosome upon binding of kirromycin.

Authors:  F J Duisterwinkel; J M De Graaf; P J Schretlen; B Kraal; L Bosch
Journal:  Eur J Biochem       Date:  1981-06

6.  Fluorescent derivatives of yeast tRNAPhe.

Authors:  W Wintermeyer; H G Zachau
Journal:  Eur J Biochem       Date:  1979-08-01

7.  Initial binding of the elongation factor Tu.GTP.aminoacyl-tRNA complex preceding codon recognition on the ribosome.

Authors:  M V Rodnina; T Pape; R Fricke; L Kuhn; W Wintermeyer
Journal:  J Biol Chem       Date:  1996-01-12       Impact factor: 5.157

8.  Molecular properties of two mutant species of the elongation factor Tu.

Authors:  P H Van der Meide; F J Duisterwinkel; J M De Graaf; B Kraal; L Bosch; J Douglass; T Blumenthal
Journal:  Eur J Biochem       Date:  1981-06

9.  Specific alterations of the EF-Tu polypeptide chain considered in the light of its three-dimensional structure.

Authors:  F J Duisterwinkel; B Kraal; J M De Graaf; A Talens; L Bosch; G W Swart; A Parmeggiani; T F La Cour; J Nyborg; B F Clark
Journal:  EMBO J       Date:  1984-01       Impact factor: 11.598

10.  Mutants of the elongation factor EF-Tu, a new class of nonsense suppressors.

Authors:  E Vijgenboom; T Vink; B Kraal; L Bosch
Journal:  EMBO J       Date:  1985-04       Impact factor: 11.598

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  16 in total

Review 1.  Evolutionary optimization of speed and accuracy of decoding on the ribosome.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Joerg Mittelstaet; Andrey L Konevega; Marina V Rodnina
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

2.  Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection.

Authors:  Sean P McClory; Joshua M Leisring; Daoming Qin; Kurt Fredrick
Journal:  RNA       Date:  2010-08-10       Impact factor: 4.942

3.  Codon-dependent tRNA fluctuations monitored with fluorescence polarization.

Authors:  Padmaja P Mishra; Mohd Tanvir Qureshi; Wenhui Ren; Tae-Hee Lee
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

4.  Distortion of tRNA upon near-cognate codon recognition on the ribosome.

Authors:  Joerg Mittelstaet; Andrey L Konevega; Marina V Rodnina
Journal:  J Biol Chem       Date:  2011-01-06       Impact factor: 5.157

5.  rRNA suppressor of a eukaryotic translation initiation factor 5B/initiation factor 2 mutant reveals a binding site for translational GTPases on the small ribosomal subunit.

Authors:  Byung-Sik Shin; Joo-Ran Kim; Michael G Acker; Kathryn N Maher; Jon R Lorsch; Thomas E Dever
Journal:  Mol Cell Biol       Date:  2008-11-24       Impact factor: 4.272

6.  Interaction strengths between the ribosome and tRNA at various steps of translocation.

Authors:  Chen-Yu Liu; Mohd Tanvir Qureshi; Tae-Hee Lee
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

7.  Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state.

Authors:  Crystal E Fagan; Jack A Dunkle; Tatsuya Maehigashi; Mai N Dang; Aishwarya Devaraj; Stacey J Miles; Daoming Qin; Kurt Fredrick; Christine M Dunham
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

Review 8.  Translational regulation by modifications of the elongation factor Tu.

Authors:  B Kraal; C Lippmann; C Kleanthous
Journal:  Folia Microbiol (Praha)       Date:  1999       Impact factor: 2.099

9.  The unique tuf2 gene from the kirromycin producer Streptomyces ramocissimus encodes a minor and kirromycin-sensitive elongation factor Tu.

Authors:  Lian N Olsthoorn-Tieleman; Sylvia E J Fischer; Barend Kraal
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

10.  Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome.

Authors:  T Pape; W Wintermeyer; M V Rodnina
Journal:  EMBO J       Date:  1998-12-15       Impact factor: 11.598

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