Literature DB >> 8972870

A quantitative and specific method for measuring transcript levels of highly homologous genes.

A J Lombardo1, G B Brown.   

Abstract

Because of their high nucleotide sequence homology, the specific detection of mRNA transcripts of individual members of a gene family presents certain problems. Here we apply and defend the single nucleotide primer extension (SNuPE) as a simple, specific, and highly quantitative assay for this purpose. The method distinguishes regions of the brain sodium channel gene family that vary by as little as a single nucleotide. The technique has been modified to include an intersample normalizer, and adaptation of the SNuPE assay to other gene families of interest to neuroscientists should be easy to achieve.

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Year:  1996        PMID: 8972870      PMCID: PMC146290          DOI: 10.1093/nar/24.23.4812

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  26 in total

1.  A sensitive, quantitative assay for measurement of allele-specific transcripts differing by a single nucleotide.

Authors:  J Singer-Sam; J M LeBon; A Dai; A D Riggs
Journal:  PCR Methods Appl       Date:  1992-02

2.  Detection of point mutations in codon 331 of mitochondrial NADH dehydrogenase subunit 2 in Alzheimer's brains.

Authors:  F H Lin; R Lin; H M Wisniewski; Y W Hwang; I Grundke-Iqbal; G Healy-Louie; K Iqbal
Journal:  Biochem Biophys Res Commun       Date:  1992-01-15       Impact factor: 3.575

3.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

Authors:  P Chomczynski; N Sacchi
Journal:  Anal Biochem       Date:  1987-04       Impact factor: 3.365

4.  Selective induction of brain type II Na+ channels by nerve growth factor.

Authors:  G Mandel; S S Cooperman; R A Maue; R H Goodman; P Brehm
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

5.  Single nucleotide primer extension to detect genetic diseases: experimental application to hemophilia B (factor IX) and cystic fibrosis genes.

Authors:  M N Kuppuswamy; J W Hoffmann; C K Kasper; S G Spitzer; S L Groce; S P Bajaj
Journal:  Proc Natl Acad Sci U S A       Date:  1991-02-15       Impact factor: 11.205

6.  Insulin receptor and insulin-responsive glucose transporter (GLUT 4) mutations and polymorphisms in a Welsh type 2 (non-insulin-dependent) diabetic population.

Authors:  S O'Rahilly; A Krook; R Morgan; A Rees; J S Flier; D E Moller
Journal:  Diabetologia       Date:  1992-05       Impact factor: 10.122

7.  Colorimetric solid-phase minisequencing assay illustrated by detection of alpha 1-antitrypsin Z mutation.

Authors:  L Harju; T Weber; L Alexandrova; M Lukin; M Ranki; A Jalanko
Journal:  Clin Chem       Date:  1993-11       Impact factor: 8.327

8.  Chronic ethanol treatment alters brain levels of gamma-aminobutyric acidA receptor subunit mRNAs: relationship to genetic differences in ethanol withdrawal seizure severity.

Authors:  K J Buck; L Hahner; J Sikela; R A Harris
Journal:  J Neurochem       Date:  1991-10       Impact factor: 5.372

9.  Familial Creutzfeldt-Jakob disease (codon 200 mutation) with supranuclear palsy.

Authors:  J M Bertoni; P Brown; L G Goldfarb; R Rubenstein; D C Gajdusek
Journal:  JAMA       Date:  1992-11-04       Impact factor: 56.272

10.  Existence of distinct sodium channel messenger RNAs in rat brain.

Authors:  M Noda; T Ikeda; T Kayano; H Suzuki; H Takeshima; M Kurasaki; H Takahashi; S Numa
Journal:  Nature       Date:  1986 Mar 13-19       Impact factor: 49.962

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