Literature DB >> 1282066

A sensitive, quantitative assay for measurement of allele-specific transcripts differing by a single nucleotide.

J Singer-Sam1, J M LeBon, A Dai, A D Riggs.   

Abstract

We have found that the single nucleotide primer extension assay, a PCR-based assay currently used qualitatively to measure allelic differences in DNA, can be used quantitatively to measure allele-specific transcripts differing by only a single nucleotide. We show that total RNA containing the Pgk-1a transcript can be specifically detected even in a 1000-fold excess of RNA containing the Pgk-1b transcript.

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Year:  1992        PMID: 1282066     DOI: 10.1101/gr.1.3.160

Source DB:  PubMed          Journal:  PCR Methods Appl        ISSN: 1054-9803


  32 in total

1.  Chromatin structure analysis of the mouse Xist locus.

Authors:  V McCabe; E J Formstone; L P O'Neill; B M Turner; N Brockdorff
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

2.  Use of terminal transferase-dependent antisense RNA amplification to determine the transcription start site of the Snrpn gene in individual neurons.

Authors:  V L Buettner; J M LeBon; C Gao; A D Riggs; J Singer-Sam
Journal:  Nucleic Acids Res       Date:  2000-04-01       Impact factor: 16.971

3.  X chromosome effect on maternal recombination and meiotic drive in the mouse.

Authors:  Elena de La Casa-Esperón; J Concepción Loredo-Osti; Fernando Pardo-Manuel de Villena; Tammi L Briscoe; Jan Michel Malette; Joe E Vaughan; Kenneth Morgan; Carmen Sapienza
Journal:  Genetics       Date:  2002-08       Impact factor: 4.562

4.  A Functional chromatin domain does not resist X chromosome inactivation: silencing of cLys correlates with methylation of a dual promoter-replication origin.

Authors:  Suyinn Chong; Joanna Kontaraki; Constanze Bonifer; Arthur D Riggs
Journal:  Mol Cell Biol       Date:  2002-07       Impact factor: 4.272

5.  Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage.

Authors:  María Gómez; Neil Brockdorff
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-22       Impact factor: 11.205

6.  Primary epimutations introduced during intracytoplasmic sperm injection (ICSI) are corrected by germline-specific epigenetic reprogramming.

Authors:  Eric de Waal; Yukiko Yamazaki; Puraskar Ingale; Marisa Bartolomei; Ryuzo Yanagimachi; John R McCarrey
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

Review 7.  Quantitative assessment of DNA methylation: Potential applications for disease diagnosis, classification, and prognosis in clinical settings.

Authors:  Romulo Martin Brena; Tim Hui-Ming Huang; Christoph Plass
Journal:  J Mol Med (Berl)       Date:  2006-01-17       Impact factor: 4.599

8.  Differential replication timing of X-linked genes measured by a novel method using single-nucleotide primer extension.

Authors:  Z Xiong; W Tsark; J Singer-Sam; A D Riggs
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

9.  Coordinate control and variation in X-linked gene expression among female mice.

Authors:  A D Greenwood; E M Southard-Smith; A T Galecki; D T Burke
Journal:  Mamm Genome       Date:  1997       Impact factor: 2.957

10.  In vivo function of mutated spliced leader RNAs in Caenorhabditis elegans.

Authors:  H Xie; D Hirsh
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

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