Literature DB >> 8972845

In vitro reconstitution of mammalian U1 snRNPs active in splicing: the U1-C protein enhances the formation of early (E) spliceosomal complexes.

C L Will1, S Rümpler, J Klein Gunnewiek, W J van Venrooij, R Lührmann.   

Abstract

We have established an in vitro reconstitution/splicing complementation system which has allowed the investigation of the role of mammalian U1 snRNP components both in splicing and at the early stages of spliceosome formation. U1 snRNPs reconstituted from purified, native snRNP proteins and either authentic or in vitro transcribed U1 snRNA restored both early (E) splicing complex formation and splicing-activity to U1-depleted extracts. In vitro reconstituted U1 snRNPs possessing an m3G or ApppG cap were equally active in splicing, demonstrating that a physiological cap structure is not absolutely required for U1 function. However, the presence of an m7GpppG or GpppG cap was deleterious to splicing, most likely due to competition for the m7G cap binding proteins. No significant reduction in splicing or E complex formation was detected with U1 snRNPs reconstituted from U1 snRNA lacking the RNA binding sites of the U1-70K or U1-A protein (i.e., stem-loop I and II, respectively). Complementation studies with purified HeLa U1 snRNPs lacking subsets of the U1-specific proteins demonstrated a role for the U1-C, but not U1-A, protein in the formation and/or stabilization of early splicing complexes. Studies with recombinant U1-C protein mutants indicated that the N-terminal domain of U1-C is necessary and sufficient for the stimulation of E complex formation.

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Year:  1996        PMID: 8972845      PMCID: PMC146292          DOI: 10.1093/nar/24.23.4614

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  41 in total

1.  Stepwise assembly of a pre-mRNA splicing complex requires U-snRNPs and specific intron sequences.

Authors:  D Frendewey; W Keller
Journal:  Cell       Date:  1985-08       Impact factor: 41.582

2.  Cap trimethylation of U snRNA is cytoplasmic and dependent on U snRNP protein binding.

Authors:  I W Mattaj
Journal:  Cell       Date:  1986-09-12       Impact factor: 41.582

3.  A compensatory base change in U1 snRNA suppresses a 5' splice site mutation.

Authors:  Y Zhuang; A M Weiner
Journal:  Cell       Date:  1986-09-12       Impact factor: 41.582

Review 4.  The superfamily of arginine/serine-rich splicing factors.

Authors:  X D Fu
Journal:  RNA       Date:  1995-09       Impact factor: 4.942

5.  Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.

Authors:  D A Melton; P A Krieg; M R Rebagliati; T Maniatis; K Zinn; M R Green
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

6.  The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro.

Authors:  S M Mount; I Pettersson; M Hinterberger; A Karmas; J A Steitz
Journal:  Cell       Date:  1983-06       Impact factor: 41.582

7.  Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.

Authors:  J D Dignam; R M Lebovitz; R G Roeder
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

8.  The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex.

Authors:  H V Colot; F Stutz; M Rosbash
Journal:  Genes Dev       Date:  1996-07-01       Impact factor: 11.361

9.  In vitro assembly of U1 snRNPs.

Authors:  J Hamm; M Kazmaier; I W Mattaj
Journal:  EMBO J       Date:  1987-11       Impact factor: 11.598

10.  U2 RNA shares a structural domain with U1, U4, and U5 RNAs.

Authors:  C Branlant; A Krol; J P Ebel; E Lazar; B Haendler; M Jacob
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

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  42 in total

1.  Yeast U1 snRNP-pre-mRNA complex formation without U1snRNA-pre-mRNA base pairing.

Authors:  H Du; M Rosbash
Journal:  RNA       Date:  2001-01       Impact factor: 4.942

2.  A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.

Authors:  C L Will; C Schneider; A M MacMillan; N F Katopodis; G Neubauer; M Wilm; R Lührmann; C C Query
Journal:  EMBO J       Date:  2001-08-15       Impact factor: 11.598

3.  The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites.

Authors:  Patrik Förch; Oscar Puig; Concepción Martínez; Bertrand Séraphin; Juan Valcárcel
Journal:  EMBO J       Date:  2002-12-16       Impact factor: 11.598

4.  Determinants within an 18-amino-acid U1A autoregulatory domain that uncouple cooperative RNA binding, inhibition of polyadenylation, and homodimerization.

Authors:  Fei Guan; Daphne Palacios; Reem I Hussein; Samuel I Gunderson
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

5.  Effects of the U1C L13 mutation and temperature regulation of yeast commitment complex formation.

Authors:  Hansen Du; Daniel F Tardiff; Melissa J Moore; Michael Rosbash
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-01       Impact factor: 11.205

6.  In vitro reconstitution of yeast splicing with U4 snRNA reveals multiple roles for the 3' stem-loop.

Authors:  Amy J Hayduk; Martha R Stark; Stephen D Rader
Journal:  RNA       Date:  2012-03-12       Impact factor: 4.942

7.  Characterization of a U2AF-independent commitment complex (E') in the mammalian spliceosome assembly pathway.

Authors:  Oliver A Kent; Dustin B Ritchie; Andrew M Macmillan
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

8.  U1 small nuclear RNA variants differentially form ribonucleoprotein particles in vitro.

Authors:  Jason A Somarelli; Annia Mesa; Carol E Rodriguez; Shalini Sharma; Rene J Herrera
Journal:  Gene       Date:  2014-02-26       Impact factor: 3.688

9.  WW domain-mediated interactions reveal a spliceosome-associated protein that binds a third class of proline-rich motif: the proline glycine and methionine-rich motif.

Authors:  M T Bedford; R Reed; P Leder
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

10.  Polypyrimidine tract binding protein blocks the 5' splice site-dependent assembly of U2AF and the prespliceosomal E complex.

Authors:  Shalini Sharma; Arnold M Falick; Douglas L Black
Journal:  Mol Cell       Date:  2005-08-19       Impact factor: 17.970

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