Literature DB >> 8927628

Measurement of genetic structure within populations using Moran's spatial autocorrelation statistics.

B K Epperson1, T Li.   

Abstract

Spatial structure of genetic variation within populations, an important interacting influence on evolutionary and ecological processes, can be analyzed in detail by using spatial autocorrelation statistics. This paper characterizes the statistical properties of spatial autocorrelation statistics in this context and develops estimators of gene dispersal based on data on standing patterns of genetic variation. Large numbers of Monte Carlo simulations and a wide variety of sampling strategies are utilized. The results show that spatial autocorrelation statistics are highly predictable and informative. Thus, strong hypothesis tests for neutral theory can be formulated. Most strikingly, robust estimators of gene dispersal can be obtained with practical sample sizes. Details about optimal sampling strategies are also described.

Mesh：

Year:  1996        PMID： 8927628      PMCID： PMC38420          DOI： 10.1073/pnas.93.19.10528

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  10 in total

1.  Homozygosity and patch structure in plant populations as a result of nearest-neighbor pollination.

Authors:  M E Turner; J C Stephens; W W Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

2.  A Test of Spatial Autocorrelation Analysis Using an Isolation-by-Distance Model.

Authors:  R R Sokal; D E Wartenberg
Journal:  Genetics       Date:  1983-09       Impact factor: 4.562

3.  Isolation by Distance.

Authors:  S Wright
Journal:  Genetics       Date:  1943-03       Impact factor: 4.562

4.  Spatial patterns of human gene frequencies in Europe.

Authors:  R R Sokal; R M Harding; N L Oden
Journal:  Am J Phys Anthropol       Date:  1989-11       Impact factor: 2.868

5.  Spatial autocorrelation of genotypes under directional selection.

Authors:  B K Epperson
Journal:  Genetics       Date:  1990-03       Impact factor: 4.562

6.  Spatial autocorrelation analysis of migration and selection.

Authors:  R R Sokal; G M Jacquez; M C Wooten
Journal:  Genetics       Date:  1989-04       Impact factor: 4.562

7.  Genetic, geographic, and linguistic distances in Europe.

Authors:  R R Sokal
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

8.  Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms.

Authors:  R C Lewontin; J Krakauer
Journal:  Genetics       Date:  1973-05       Impact factor: 4.562

9.  Spatial distributions of genotypes under isolation by distance.

Authors:  B K Epperson
Journal:  Genetics       Date:  1995-08       Impact factor: 4.562

10.  Spatial autocorrelation analysis of the distribution of genotypes within populations of lodgepole pine.

Authors:  B K Epperson; R W Allard
Journal:  Genetics       Date:  1989-02       Impact factor: 4.562
  10 in total
  14 in total

1.  Reconstruction of prehistory on the basis of genetic data.

Authors:  L Simoni; F Calafell; D Pettener; J Bertranpetit; G Barbujani
Journal:  Am J Hum Genet       Date:  2000-03       Impact factor: 11.025

2.  Impacts of seed and pollen flow on population genetic structure for plant genomes with three contrasting modes of inheritance.

Authors:  X S Hu; R A Ennos
Journal:  Genetics       Date:  1999-05       Impact factor: 4.562

3.  A new eigenfunction spatial analysis describing population genetic structure.

Authors:  José Alexandre Felizola Diniz-Filho; João Vitor Barnez P L Diniz; Thiago Fernando Rangel; Thannya Nascimento Soares; Mariana Pires de Campos Telles; Rosane Garcia Collevatti; Luis Mauricio Bini
Journal:  Genetica       Date:  2013-10-27       Impact factor: 1.082

4.  Fine-scale spatial genetic structure with nonuniform distribution of individuals.

Authors:  A Doligez; C Baril; H I Joly
Journal:  Genetics       Date:  1998-02       Impact factor: 4.562

5.  Geographical patterns of turnover and nestedness-resultant components of allelic diversity among populations.

Authors:  Jose Alexandre Felizola Diniz-Filho; Rosane Garcia Collevatti; Thannya Nascimento Soares; Mariana Pires de Campos Telles
Journal:  Genetica       Date:  2012-08-12       Impact factor: 1.082

6.  The association between heavy metal soil pollution and stomach cancer: a case study in Hangzhou City, China.

Authors:  Xufeng Fei; Zhaohan Lou; George Christakos; Zhouqiao Ren; Qingmin Liu; Xiaonan Lv
Journal:  Environ Geochem Health       Date:  2018-04-20       Impact factor: 4.609

7.  Genetic structure and isolation by distance in a landrace of Thai rice.

Authors:  Tonapha Pusadee; Sansanee Jamjod; Yu-Chung Chiang; Benjavan Rerkasem; Barbara A Schaal
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-27       Impact factor: 11.205

Review 8.  Ecogeographic genetic epidemiology.

Authors:  Chantel D Sloan; Eric J Duell; Xun Shi; Rebecca Irwin; Angeline S Andrew; Scott M Williams; Jason H Moore
Journal:  Genet Epidemiol       Date:  2009-05       Impact factor: 2.135

9.  Isolation by distance, web service.

Authors:  Jeffrey L Jensen; Andrew J Bohonak; Scott T Kelley
Journal:  BMC Genet       Date:  2005-03-11       Impact factor: 2.797

10.  Role of evolutionary and ecological factors in the reproductive success and the spatial genetic structure of the temperate gorgonian Paramuricea clavata.

Authors:  Kenza Mokhtar-Jamaï; Rafel Coma; Jinliang Wang; Frederic Zuberer; Jean-Pierre Féral; Didier Aurelle
Journal:  Ecol Evol       Date:  2013-05-08       Impact factor: 2.912
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.