Literature DB >> 8905232

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.

T Oshima1, H Aiba, T Baba, K Fujita, K Hayashi, A Honjo, K Ikemoto, T Inada, T Itoh, M Kajihara, K Kanai, K Kashimoto, S Kimura, M Kitagawa, K Makino, S Masuda, T Miki, K Mizobuchi, H Mori, K Motomura, Y Nakamura, H Nashimoto, Y Nishio, N Saito, T Horiuchi.   

Abstract

The 718,122 base pair sequence of the Escherichia coli K-12 genome corresponding to the region from 12.7 to 28.0 minutes on the genetic map is described. This region contains at least 681 potential open reading frames, of which 277 (41%) have been previously identified, 147 (22%) are homologous to other known genes, 139 (20%) are identical or similar to the hypothetical genes registered in databases, and the remaining 118 (17%) do not show a significant similarity to any other gene. In this region, we assigned a cluster of cit genes encoding multienzyme citrate lyase, two clusters of fimbrial genes and a set of lysogenic phage genes encoding integrase, excisionase and repressor in the e14 genetic element. In addition, a new valine tRNA gene, designated valZ, and a family of long directly repeated sequences, LDR-A, -B and -C, were found.

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Year:  1996        PMID: 8905232     DOI: 10.1093/dnares/3.3.137

Source DB:  PubMed          Journal:  DNA Res        ISSN: 1340-2838            Impact factor:   4.458


  15 in total

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Review 2.  Linkage map of Escherichia coli K-12, edition 10: the traditional map.

Authors:  M K Berlyn
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Review 3.  Linkage map of Escherichia coli K-12, edition 10: the physical map.

Authors:  K E Rudd
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4.  The role of the C-terminal region in phosphoglycerate mutase.

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5.  CspA, the major cold shock protein of Escherichia coli, negatively regulates its own gene expression.

Authors:  W Bae; P G Jones; M Inouye
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

6.  Polar localization of the replication origin and terminus in Escherichia coli nucleoids during chromosome partitioning.

Authors:  H Niki; S Hiraga
Journal:  Genes Dev       Date:  1998-04-01       Impact factor: 11.361

7.  Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli.

Authors:  K Yamanaka; M Inouye
Journal:  J Bacteriol       Date:  1997-08       Impact factor: 3.490

8.  Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants.

Authors:  D Jiang; Z Hatahet; J O Blaisdell; R J Melamede; S S Wallace
Journal:  J Bacteriol       Date:  1997-06       Impact factor: 3.490

9.  The mdoC gene of Escherichia coli encodes a membrane protein that is required for succinylation of osmoregulated periplasmic glucans.

Authors:  J M Lacroix; E Lanfroy; V Cogez; Y Lequette; A Bohin; J P Bohin
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

10.  Comparative analysis of FUR regulons in gamma-proteobacteria.

Authors:  E M Panina; A A Mironov; M S Gelfand
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

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