Literature DB >> 11812853

Comparative analysis of FUR regulons in gamma-proteobacteria.

E M Panina1, A A Mironov, M S Gelfand.   

Abstract

Iron is an essential element for the survival and pathogenesis of bacteria. The strict control of iron homeostasis is mediated by the FUR repressor, which is highly conserved among various bacterial species. Here we apply the comparative genomics approach to analyze candidate Fur-binding sites in the genomes of Escherichia coli (K12 and O157:H7), Salmonella typhi, Yersinia pestis and Vibrio cholerae. We describe a number of new loci encoding siderophore biosynthesis and transport proteins. A new regulator of iron-acquisition systems was found in S.typhi. We predict FUR regulation for several virulence systems. We also predict FUR regulation for the chemotaxis system of V.cholerae that is probably involved in the process of pathogenesis.

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Year:  2001        PMID: 11812853      PMCID: PMC97565          DOI: 10.1093/nar/29.24.5195

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  57 in total

1.  Mechanism for iron-regulated transcription of the Escherichia coli cir gene: metal-dependent binding of fur protein to the promoters.

Authors:  D W Griggs; J Konisky
Journal:  J Bacteriol       Date:  1989-02       Impact factor: 3.490

2.  Metal ion regulation of gene expression. Fur repressor-operator interaction at the promoter region of the aerobactin system of pColV-K30.

Authors:  V de Lorenzo; F Giovannini; M Herrero; J B Neilands
Journal:  J Mol Biol       Date:  1988-10-20       Impact factor: 5.469

3.  Conformational changes of the ferric uptake regulation protein upon metal activation and DNA binding; first evidence of structural homologies with the diphtheria toxin repressor.

Authors:  A Gonzalez de Peredo; C Saint-Pierre; J M Latour; I Michaud-Soret; E Forest
Journal:  J Mol Biol       Date:  2001-06-29       Impact factor: 5.469

4.  Information content of binding sites on nucleotide sequences.

Authors:  T D Schneider; G D Stormo; L Gold; A Ehrenfeucht
Journal:  J Mol Biol       Date:  1986-04-05       Impact factor: 5.469

5.  Cloning, nucleotide sequence, and mutagenesis of a gene (irpA) involved in iron-deficient growth of the cyanobacterium Synechococcus sp. strain PCC7942.

Authors:  K J Reddy; G S Bullerjahn; D M Sherman; L A Sherman
Journal:  J Bacteriol       Date:  1988-10       Impact factor: 3.490

Review 6.  Comparative analysis of regulatory patterns in bacterial genomes.

Authors:  M S Gelfand; P S Novichkov; E S Novichkova; A A Mironov
Journal:  Brief Bioinform       Date:  2000-11       Impact factor: 11.622

7.  Effect of chemotaxis on the interaction of cholera vibrios with intestinal mucosa.

Authors:  R Freter; P C O'Brien; M S Macsai
Journal:  Am J Clin Nutr       Date:  1979-01       Impact factor: 7.045

Review 8.  Oxygen toxicity, oxygen radicals, transition metals and disease.

Authors:  B Halliwell; J M Gutteridge
Journal:  Biochem J       Date:  1984-04-01       Impact factor: 3.857

9.  Cloning and expression of the fhu genes involved in iron(III)-hydroxamate uptake by Escherichia coli.

Authors:  L Fecker; V Braun
Journal:  J Bacteriol       Date:  1983-12       Impact factor: 3.490

10.  Iron-regulated hemolysin production and utilization of heme and hemoglobin by Vibrio cholerae.

Authors:  J A Stoebner; S M Payne
Journal:  Infect Immun       Date:  1988-11       Impact factor: 3.441

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  52 in total

1.  Regulog analysis: detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus.

Authors:  Wynand B L Alkema; Boris Lenhard; Wyeth W Wasserman
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

2.  Fast, sensitive discovery of conserved genome-wide motifs.

Authors:  Nnamdi E Ihuegbu; Gary D Stormo; Jeremy Buhler
Journal:  J Comput Biol       Date:  2012-02       Impact factor: 1.479

3.  Characterization of MtsR, a new metal regulator in group A streptococcus, involved in iron acquisition and virulence.

Authors:  Christopher S Bates; Chadia Toukoki; Melody N Neely; Zehava Eichenbaum
Journal:  Infect Immun       Date:  2005-09       Impact factor: 3.441

4.  Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation.

Authors:  Alexandra R Mey; Stephanie A Craig; Shelley M Payne
Journal:  Infect Immun       Date:  2005-09       Impact factor: 3.441

5.  The Rhizobium leguminosarum regulator IrrA affects the transcription of a wide range of genes in response to Fe availability.

Authors:  Jonathan D Todd; Gary Sawers; Dmitry A Rodionov; Andrew W B Johnston
Journal:  Mol Genet Genomics       Date:  2006-04-20       Impact factor: 3.291

6.  Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation.

Authors:  Bryan W Davies; Ryan W Bogard; John J Mekalanos
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-12       Impact factor: 11.205

7.  Distribution of centromere-like parS sites in bacteria: insights from comparative genomics.

Authors:  Jonathan Livny; Yoshiharu Yamaichi; Matthew K Waldor
Journal:  J Bacteriol       Date:  2007-09-28       Impact factor: 3.490

Review 8.  Comparative genomic reconstruction of transcriptional regulatory networks in bacteria.

Authors:  Dmitry A Rodionov
Journal:  Chem Rev       Date:  2007-07-18       Impact factor: 60.622

Review 9.  This is not your mother's repressor: the complex role of fur in pathogenesis.

Authors:  Beth M Carpenter; Jeannette M Whitmire; D Scott Merrell
Journal:  Infect Immun       Date:  2009-04-13       Impact factor: 3.441

Review 10.  Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria.

Authors:  Anja Brencic; Stephen C Winans
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

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