Literature DB >> 9729612

Linkage map of Escherichia coli K-12, edition 10: the physical map.

K E Rudd1.   

Abstract

A physical map, EcoMap10, of the now completely sequenced Escherichia coli chromosome is presented. Calculated genomic positions for the eight restriction enzymes BamHI, HindIII, EcoRI, EcoRV, BglI, KpnI, PstI, and PvuII are depicted. Both sequenced and unsequenced Kohara/Isono miniset clones are aligned to this calculated restriction map. DNA sequence searches identify the precise locations of insertion sequence elements and repetitive extragenic palindrome clusters. EcoGene10, a revised set of genes and functionally uncharacterized open reading frames (ORFs), is also depicted on EcoMap10. The complete set of unnamed ORFs in EcoGene10 are assigned provisional names beginning with the letter "y" by using a systematic nomenclature.

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Year:  1998        PMID： 9729612      PMCID： PMC98937          DOI： 10.1128/MMBR.62.3.985-1019.1998

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN： 1092-2172            Impact factor:   11.056


  15 in total

1.  The BIME family of bacterial highly repetitive sequences.

Authors:  E Gilson; W Saurin; D Perrin; S Bachellier; M Hofnung
Journal:  Res Microbiol       Date:  1991 Feb-Apr       Impact factor: 3.992

Review 2.  Linkage map of Escherichia coli K-12, edition 10: the traditional map.

Authors:  M K Berlyn
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

3.  Physical map location of the tdc operon of Escherichia coli.

Authors:  H P Schweizer; P Datta
Journal:  J Bacteriol       Date:  1990-06       Impact factor: 3.490

4.  The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.

Authors:  Y Kohara; K Akiyama; K Isono
Journal:  Cell       Date:  1987-07-31       Impact factor: 41.582

5.  A subfamily of E. coli palindromic units implicated in transcription termination?

Authors:  E Gilson; J P Rousset; J M Clément; M Hofnung
Journal:  Ann Inst Pasteur Microbiol       Date:  1986 Nov-Dec

6.  Mapping sequenced E.coli genes by computer: software, strategies and examples.

Authors:  K E Rudd; W Miller; C Werner; J Ostell; C Tolstoshev; S G Satterfield
Journal:  Nucleic Acids Res       Date:  1991-02-11       Impact factor: 16.971

7.  Mapping of insertion element IS5 in the Escherichia coli K-12 chromosome. Chromosomal rearrangements mediated by IS5.

Authors:  M Umeda; E Ohtsubo
Journal:  J Mol Biol       Date:  1990-05-20       Impact factor: 5.469

8.  Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map.

Authors:  K E Rudd; W Miller; J Ostell; D A Benson
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

9.  Precise mapping of the rnpB gene encoding the RNA component of RNase P in Escherichia coli K-12.

Authors:  Y Komine; H Inokuchi
Journal:  J Bacteriol       Date:  1991-03       Impact factor: 3.490

Review 10.  Colibri: a functional data base for the Escherichia coli genome.

Authors:  C Médigue; A Viari; A Hénaut; A Danchin
Journal:  Microbiol Rev       Date:  1993-09
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  60 in total

1.  EcoGene: a genome sequence database for Escherichia coli K-12.

Authors:  K E Rudd
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Oversynthesis of a new Escherichia coli small RNA suppresses export toxicity of DsbA'-PhoA unfoldable periplasmic proteins.

Authors:  A Guigueno; J Dassa; P Belin; P L Boquet
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

3.  Escherichia coli gene ydeA encodes a major facilitator pump which exports L-arabinose and isopropyl-beta-D-thiogalactopyranoside.

Authors:  S Carolé; S Pichoff; J P Bouch
Journal:  J Bacteriol       Date:  1999-08       Impact factor: 3.490

4.  Characterization of the uup locus and its role in transposon excisions and tandem repeat deletions in Escherichia coli.

Authors:  M Reddy; J Gowrishankar
Journal:  J Bacteriol       Date:  2000-04       Impact factor: 3.490

5.  The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons.

Authors:  C M Gifford; S S Wallace
Journal:  Nucleic Acids Res       Date:  2000-02-01       Impact factor: 16.971

6.  Prophage lambda induces terminal recombination in Escherichia coli by inhibiting chromosome dimer resolution. An orientation-dependent cis-effect lending support to bipolarization of the terminus.

Authors:  J Corre; J Patte; J M Louarn
Journal:  Genetics       Date:  2000-01       Impact factor: 4.562

Review 7.  Escherichia coli and Salmonella 2000: the view from here.

Authors:  M Schaechter
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

8.  trans-acting mutations in loci other than kdpDE that affect kdp operon regulation in Escherichia coli: effects of cytoplasmic thiol oxidation status and nucleoid protein H-NS on kdp expression.

Authors:  A A Sardesai; J Gowrishankar
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

9.  Identification of an ancillary protein, YabF, required for activity of the KefC glutathione-gated potassium efflux system in Escherichia coli.

Authors:  S Miller; L S Ness; C M Wood; B C Fox; I R Booth
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

10.  A novel selenite- and tellurite-inducible gene in Escherichia coli.

Authors:  J Guzzo; M S Dubow
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792
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