Literature DB >> 8905151

A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria.

J R Lobry1.   

Abstract

A simple adaptation of Ninio's vectorial representation of DNA sequences for the detection of replication origins in bacteria is presented. The origins of replication in Escherichia coli, Bacillus subtilis, Haemophilus influenzae and Mycoplasma genitalium are well outlined with this graphical representation.

Entities:  

Mesh：

Substances：

Year:  1996        PMID： 8905151     DOI： 10.1016/0300-9084(96)84764-x

Source DB:  PubMed          Journal:  Biochimie        ISSN： 0300-9084            Impact factor:   4.079


  38 in total

1.  Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes.

Authors:  Claude-Alain H Roten; Patrick Gamba; Jean-Luc Barblan; Dimitri Karamata
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  How does replication-associated mutational pressure influence amino acid composition of proteins?

Authors:  A Gierlik; M Kowalczuk; M R Dudek; S Cebrat
Journal:  Genome Res       Date:  1999-05       Impact factor: 9.043

3.  Strand compositional asymmetries of nuclear DNA in eukaryotes.

Authors:  Deng K Niu; Kui Lin; Da-Yong Zhang
Journal:  J Mol Evol       Date:  2003-09       Impact factor: 2.395

4.  Where does bacterial replication start? Rules for predicting the oriC region.

Authors:  Pawel Mackiewicz; Jolanta Zakrzewska-Czerwinska; Anna Zawilak; Miroslaw R Dudek; Stanislaw Cebrat
Journal:  Nucleic Acids Res       Date:  2004-07-16       Impact factor: 16.971

Review 5.  Identification of replication origins in archaeal genomes based on the Z-curve method.

Authors:  Ren Zhang; Chun-Ting Zhang
Journal:  Archaea       Date:  2005-05       Impact factor: 3.273

6.  DNA sequence representation by trianders and determinative degree of nucleotides.

Authors:  Diana Duplij; Steven Duplij
Journal:  J Zhejiang Univ Sci B       Date:  2005-08       Impact factor: 3.066

7.  ParABS systems of the four replicons of Burkholderia cenocepacia: new chromosome centromeres confer partition specificity.

Authors:  Nelly Dubarry; Franck Pasta; David Lane
Journal:  J Bacteriol       Date:  2006-02       Impact factor: 3.490

8.  Strand compositional asymmetries in vertebrate large genes.

Authors:  Hai-Fang Wang; Wen-Ru Hou; Deng-Ke Niu
Journal:  Mol Biol Rep       Date:  2007-04-10       Impact factor: 2.316

9.  The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals.

Authors:  Mercer R Brugler; Scott C France
Journal:  J Mol Evol       Date:  2008-05-28       Impact factor: 2.395

10.  Analyzing genomes with cumulative skew diagrams.

Authors:  A Grigoriev
Journal:  Nucleic Acids Res       Date:  1998-05-15       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.